Gene Information

Name : THA_251 (THA_251)
Accession : YP_002334094.1
Strain : Thermosipho africanus TCF52B
Genome accession: NC_011653
Putative virulence/resistance : Resistance
Product : lipoprotein-releasing system ATP-binding protein LolD
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 249223 - 249912 bp
Length : 690 bp
Strand : -
Note : -

DNA sequence : 
ATGATAGTAAGGGCAAAAAATTTAACAAAAGTGTATGGTAAAAAGGAAAAATTTGAAGCTTTAAAGGGTGTTAACCTTGA
AATAAATGAAGGTGAAATTCTTGCTATTTTGGGGCCATCTGGTTGTGGTAAAACTACTCTTTTAAATTGTCTTTCAGGAC
TTGATGAGCCAACATCAGGTGAAGTTGAAGTTCTTGGAAAAAGACTTGACAGAATGAATGAAGAGGAAAAAACAATTTTT
AGATCCGAAAACATGGGGTTTATTTTCCAATTTTTTAATCTTATACCAGTTCTAACTGCTGTTGAAAATGTTGAGATTCC
TTTGCTGATTTCAAAGAACGGAACTCCAAGCGAGATTAGAAAAAAAGCTCTTGAGTGGCTTGAAAGGTTACATATACTTC
ATAGGAAGAATGCTTATCCGTCAGAAATGTCTGGTGGTGAACAGCAAAGAGTGGCTATTGCAAGGGCATTGATTAATAAT
CCAAAGATTGTTTGGGCAGATGAACCAACTGGGGCGCTTGATACAAAGAATAGTCAAGAGATAATCGATTTAATCATTAA
TATGAATAAAGAGCTAGGAACAACATTTGTTATTGTCACTCACGATATAAATGTTGCAAAAAAGGCACATAGAATTATTA
AAATGGATAGTGGGCAAATAGTTTCTGAAGAGATTCTTGTGAGAGGATGA

Protein sequence : 
MIVRAKNLTKVYGKKEKFEALKGVNLEINEGEILAILGPSGCGKTTLLNCLSGLDEPTSGEVEVLGKRLDRMNEEEKTIF
RSENMGFIFQFFNLIPVLTAVENVEIPLLISKNGTPSEIRKKALEWLERLHILHRKNAYPSEMSGGEQQRVAIARALINN
PKIVWADEPTGALDTKNSQEIIDLIINMNKELGTTFVIVTHDINVAKKAHRIIKMDSGQIVSEEILVRG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Spaf_1862 YP_006310627.1 amino acid ABC transporter ATP-binding protein Not tested FWisland_2 Protein 3e-23 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
THA_251 YP_002334094.1 lipoprotein-releasing system ATP-binding protein LolD NC_012469.1.7686878. Protein 2e-39 46
THA_251 YP_002334094.1 lipoprotein-releasing system ATP-binding protein LolD CP001581.1.gene798.p Protein 2e-35 46
THA_251 YP_002334094.1 lipoprotein-releasing system ATP-binding protein LolD CP001581.1.gene598.p Protein 4e-39 43
THA_251 YP_002334094.1 lipoprotein-releasing system ATP-binding protein LolD NC_012469.1.7685735. Protein 1e-32 41