Gene Information

Name : ybdN (E2348C_0505)
Accession : YP_002328077.1
Strain : Escherichia coli E2348/69
Genome accession: NC_011601
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : R : General function prediction only
COG ID : COG3969
EC number : -
Position : 566160 - 567380 bp
Length : 1221 bp
Strand : -
Note : -

DNA sequence : 
ATGTCTATTTATAAAATCCCGCTTCCACTGAATATTCTGGAAGCTGCAAAAGAACGTATTACCTGGACACTTAATACCCT
ACCCCGTATCTGTGTTTCTTTTTCGGGTGGTAAAGATTCCGGATTAATGCTGCATCTGACAGCCGAAATTGCCCGACAAA
TGGGCAAAAAAATCTGCGTTTTGTTTATCGACTGGGAAGCGCAGTTCTCATGCACTATTAACTATGTTCAGTCATTACGT
GAGTTTTACGCCGATGTCATCGAAGAGTTTTACTGGGTTGCGCTCCCGCTTACGACGCAAAATTCCCTTTCTCAATACCA
ACCCGAATGGCAGTGCTGGGAACCTGATGTCGAATGGGTGCGTCAGCCCCCGCAAGATGCGATAACCGATCCTGACTTTT
TCTCCTTTTACCAGCCTGGTATGACCTTCGAACAATTTGTGCGTGAGTTTGCCGAATGGTTTTCGCAAAAGCGTCCGGCG
GCGATGATGATCGGCATCCGTGCAGATGAGTCCTACAACCGTTTTGTCGCCATCGCCAGTTTAAATAAACAACGTTTTGC
CGATGATAAGCCCTGGACCACCGCCGCACCAGGCGGTCATAGCTGGTACATTTACCCCATCTACGACTGGAGAGTGGCTG
ATATCTGGACCTGGTATGCTAACCATCAACAGCTCTGTAACCCACTGTATAATATAATGTATCAGGCAGGCGTTCCTCTG
CGTCATATGCGAATTTGCGAACCTTTTGGCCCGGAGCAACGGCAAGGATTATGGCTCTATCACGTTATCGAACCGGATCG
CTGGGCTGCTATGTGCGCACGAGTCAGCGGGGTAAAAAGTGGCGGCATTTACGCCGGACATGATAATCATTTTTATGGTC
ATCGGAAAATCCTCAAGCCAGAACATTTAGACTGGCAAGAATATGCATTATTGCTGCTCAATAGCATGCCGGAAAAAACA
GCTGAGCATTACCGCAATAAAATCGCCATTTATTTGCACTGGTATCAGAAAAAAGGCATCGAAGTTCCACAAACCCAGCA
AGGGGACATTGGCGCGAAAGATATCCCCTCCTGGCGGCGAATATGCAAAGTTTTACTCAATAACGATTACTGGTGCCGGG
CATTATCATTTAGTCCTACGAAAGCGAAGAACTATCAGCGTTATAACGAACGGATAAAAGGAAAACGTCAGGAATGGGGG
ATACTATGCAACAACGATTAA

Protein sequence : 
MSIYKIPLPLNILEAAKERITWTLNTLPRICVSFSGGKDSGLMLHLTAEIARQMGKKICVLFIDWEAQFSCTINYVQSLR
EFYADVIEEFYWVALPLTTQNSLSQYQPEWQCWEPDVEWVRQPPQDAITDPDFFSFYQPGMTFEQFVREFAEWFSQKRPA
AMMIGIRADESYNRFVAIASLNKQRFADDKPWTTAAPGGHSWYIYPIYDWRVADIWTWYANHQQLCNPLYNIMYQAGVPL
RHMRICEPFGPEQRQGLWLYHVIEPDRWAAMCARVSGVKSGGIYAGHDNHFYGHRKILKPEHLDWQEYALLLLNSMPEKT
AEHYRNKIAIYLHWYQKKGIEVPQTQQGDIGAKDIPSWRRICKVLLNNDYWCRALSFSPTKAKNYQRYNERIKGKRQEWG
ILCNND

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ibrA ADD91735.1 putative phosphoadenosine phosphosulfate reductase IbrA Not tested PAI-I AL862 Protein 2e-123 59
Z1643 AAQ19139.1 putative phosphoadenosine phosphosulfate reductase Not tested PAI I CL3 Protein 6e-124 59
z1203 CAD33763.1 Z1203 protein Not tested PAI I 536 Protein 1e-124 58
Z1203 NP_286738.1 hypothetical protein Not tested TAI Protein 2e-123 58
ORF_31 AAZ04441.1 conserved hypothetical protein Not tested PAI I APEC-O1 Protein 9e-125 58
Z1643 NP_287146.1 hypothetical protein Not tested TAI Protein 2e-123 58
APECO1_3502 YP_854308.1 hypothetical protein Not tested PAI I APEC-O1 Protein 1e-124 58
c5209 NP_757057.1 hypothetical protein Not tested PAI II CFT073 Protein 1e-124 58
STY4583 NP_458667.1 conserved hypothetical protein Not tested SPI-7 Protein 3e-124 58
t4277 NP_807875.1 hypothetical protein Not tested SPI-7 Protein 2e-124 58

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ybdN YP_002328077.1 hypothetical protein VFG1504 Protein 9e-125 58