Gene Information

Name : sepQ (E2348C_3945)
Accession : YP_002331407.1
Strain : Escherichia coli E2348/69
Genome accession: NC_011601
Putative virulence/resistance : Virulence
Product : T3SS structure protein SepQ
Function : -
COG functional category : N : Cell motility
COG ID : COG1886
EC number : -
Position : 4117796 - 4118713 bp
Length : 918 bp
Strand : -
Note : -

DNA sequence : 
ATGAAGCCATTGAGTTCACAATTGAATATGAAAATTAACGATTTTTATTTGCCGTTGTTGCCAGTTATCGGAACCGGTCG
CCTCTATATTACGTCCGAAGGTCATGCTTGCCATGCATATTTTCGTGAGGTCAGCGGTCATGGTATTCGTTTCACGTTGA
CATACTCGGGCTATGAGGGGCGTTTCTGGATATCAGAAGAACAGTTCATTCAGTGGTGCCAAGAGTTATTCCCGTATAGT
GAAAGCCGGCTGATACCGGAAGATATGATAAAACTCATGATCTTATGGGTAATGCAGACTGCCTTACCGGAAGGTGATGT
GTCAGTTGATGATGTTCAATTTACGATGCTAAATAAAGATGTTTATCCGGTAATAGAAAATAATAATGGAGAAAACAGAC
TTAATGTAATTATACTCGAAACAACGGTACAAAGTTTACAACATCTGATTAATGATAATTGGCAATTTGTTCCACATTCT
AATGCTCTTTTTTTTGATGGCTATATCGTACCTGGGTGGACTGATTATCCAGTTACAGAGTTGAGAGTTGGTGATAGTCT
GAGACTCTATCATGTTGATGATAGTCAAGAGAGAAGGTGCTGGATTGTTATTAATAACCCTTTGGCAACCGTAAAGCTGA
GCGATAATAATTTATCTGTCACGGATGTTCTGGCTGCAGATCCGTTATGTACTATCAGCAGCGAGACTGTGATGAATCGC
ATTTATTGTGTGATTGGCACAGTGCATATTGATATACATATGTTGCGTAATGTCCAAAAAGATGACATTATCGATTCAAC
GGGATATCATCTTTTTGGTGGGTGCCAGTTAGTACGGAATAATACCACAATCGCATACGGGAGTATTATAAAAATCAACG
AAGATTTTTATTTTACTATTAGCGTAGTATGTGATTAA

Protein sequence : 
MKPLSSQLNMKINDFYLPLLPVIGTGRLYITSEGHACHAYFREVSGHGIRFTLTYSGYEGRFWISEEQFIQWCQELFPYS
ESRLIPEDMIKLMILWVMQTALPEGDVSVDDVQFTMLNKDVYPVIENNNGENRLNVIILETTVQSLQHLINDNWQFVPHS
NALFFDGYIVPGWTDYPVTELRVGDSLRLYHVDDSQERRCWIVINNPLATVKLSDNNLSVTDVLAADPLCTISSETVMNR
IYCVIGTVHIDIHMLRNVQKDDIIDSTGYHLFGGCQLVRNNTTIAYGSIIKINEDFYFTISVVCD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sepQ AAC38386.1 SepQ Virulence LEE Protein 2e-142 100
sepQ YP_003236085.1 T3SS structure protein SepQ Virulence LEE Protein 2e-137 96
sepQ AAC31510.1 L0031 Virulence LEE Protein 8e-136 94
sepQ NP_290265.1 hypothetical protein Virulence LEE Protein 1e-135 94
sepQ ACU09455.1 SepQ protein Virulence LEE Protein 8e-136 94
ECs4565 NP_312592.1 SepQ Virulence LEE Protein 1e-135 94
sepQ CAC81865.1 SepQ protein Not tested LEE II Protein 6e-130 89
sepQ YP_003223472.1 T3SS structure protein SepQ Virulence LEE Protein 8e-130 89
sepQ CAI43871.1 SepQ protein Virulence LEE Protein 6e-130 89
sepQ YP_003232156.1 T3SS structure protein SepQ Virulence LEE Protein 8e-130 89
sepQ AAK26718.1 SepQ Virulence LEE Protein 2e-128 88
sepQ AAL57545.1 SepQ Virulence LEE Protein 2e-128 88
unnamed AAL06372.1 SepQ Virulence LEE Protein 3e-122 82

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sepQ YP_002331407.1 T3SS structure protein SepQ VFG0733 Protein 9e-143 100
sepQ YP_002331407.1 T3SS structure protein SepQ VFG0809 Protein 5e-136 94