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Name : yfcU (E2348C_2477) Accession : YP_002329981.1 Strain : Escherichia coli E2348/69 Genome accession: NC_011601 Putative virulence/resistance : Virulence Product : outer membrane usher protein Function : - COG functional category : N : Cell motility COG ID : COG3188 EC number : - Position : 2574007 - 2576646 bp Length : 2640 bp Strand : - Note : - DNA sequence : ATGCCAGAACATTCTTTTCTCCGTTTACGGGGGCTTTCGTGGTGGATTGCTCTGGCAATTTCTGGAAGTCCATTTAATGC CCTGGCAGACGATACCATTCAGTTTGATGGCCGATTTCTTGATTTAAAAGGCAATACCAAAATTGATTTGGGCCGTTTTT CGCAAAAAGGCTATGTAGAACCGGGAAAATATAACTTACGCGTTCATGTAAATAATCAGCCGTTACCTGACGACTACGAT ATCTACTGGTACGCAACTGAAAACGATCCGAATAAATCATATGCCTGCTTATCGCCAGAGCTGGTTGCCCAGTTTGGTCT GAAGGAAGATATTGCGAAGAATTTGCAATGGATCCGCGATGGTCAGTGTCTGAATACGGCACTTTTAGCAGGTACAGAAA TTAGCGGCGATTTAGGCCAGTCTGCACTCCTTGTTTCTGTACCGCAGGCTTATCTGGAATATACCGACAGCGAGTGGGAC CCGCCTTCGCGCTGGGATGACGGTATCCCTGGGCTTATTGCCGATTACAGTATCAACGCGCAAACCCGACATGAAAATGG GGGTGATGACACTAACGACATCAGCGGTAATGGTACGGTCGGCGTTAACGTTGGGCCGTGGCGCTTACGAGCTGACTGGC AGAGCGATTATCAGCATACCCGCAGTAACGATGACGGCGACACTGACGATAGCGGTACGCAAAAAAACTGGGAGTGGAGT CGTTACTACGCCTGGCGCGCCTTGCCGTCATTAAAAGCCAAACTTTCGCTGGGCGAAGATTATCTCAACTCCGATATTTT TGATGGCTTCAGTTACATTGGCGGCAGCATCAGTACCGATGATCAAATGTTACCGCCAAACCTGCGCGGCTACGCCCCCG ATATTTCAGGTGTTGCACACACTACCGCTAAAGTGACCGTAACCCAAATGGGCCGTGTCATTTACGAAACTCAGGTGCCT GCAGGTCCATTCCGCATTCAGGATATTGGCGATTCCGTCTCTGGCACGCTGCATGTCCGCATTGAAGAACAAAACGGCCA GGTACAGGAATACGACGTCAGCACGGCGTCCATGCCGTTCCTGACTCGCCCCGGCCAGGTACGTTACAAAGTGACAATGG GGCGTCCACAAAACTGGGACCATCAGGTTGCAGGTAGCTTCTTCTCGGGCGGCGAGGCATCGTGGGGGATTGCCAATGGC TGGTCGCTCTACGGCGGTGCGTTAGCCGATGAAAACTACCAGTCGGCGGCGCTGGGCCTCGGTCGTGACCTGGCGCTGCT AGGCGCGTTAGCGTTTGATGTCACTCACTCTCGTGTTCAACTCGACGATAACAGCGTGTATGGCAACAAAACGCTGGACG GCAACTCTTATCGCGTCAGCTATGCCAAAGATTTTGATGAACTCAACAGTCGGGTGACGTTTGCTGGATACCGCTTCTCT GAAAAAAACTACATGACCATGAGCGAGTATCTGGATGCGAACGACGACGACCGGGCGCGCACCGGTAACGACAAAGAGAT GTATATGGTCACCTATAACCAGAACTTCACGGATGCGCGCGTTTCGGTCTATCTCAATTATTCCCACCATACCTACTGGG ATCGCCAGGATCAGACCAACTACAACATGATGCTTTCTCATTATTTCAATTTAGGAAGCCTTCGTAACTTGAGCGTTTCT CTGACTGGTTATCGCTACGAATACGATAAAAGTGCCGACAAGGGGGTTTATCTGTCCTTAAGTTTGCCGTGGGGCGACAA CAGCACTATCAGTTACAACGGCAACTATGGCAGCGGTGCCGACAGCAATCAGGTGAGTCTGTATCACCGCATTGATGACG CCAGCCACTACACGTTAAGCGCCGGAACCAGCGAAAACCACAGCAGCGTGGATGGCTACTACAGCCACGATGGCACTCTG GCAAAAGTTGATCTCAGTGCTAACTACCATGAAGGGCAATACACCTCAGCAGGGATCTCTTTACAGGGCGGGGCAACGCT GACCGCTCATGGCGGGGCACTGCATCGTACACAAAATATGGGCGGCACACGTCTGTTAATCGACGCTGATGGTGTTGCTA ATGTGCCGGTTGAAGGTAATGGTTCCGCCGTTTATACCAACATGTTCGGCAAAGCGGTGGTGGCAGATGTGAATGATTAC TACCGCAACCAGGCTTATATCGATTTGAACAAACTGCCGGAAAACGCCGAAGCCACGAAATCAGTGGTTCAGGCAACGCT GACGGAAGGCGCTATTGGCTACCGTAAATTTGCGGTAATCAGCGGTGAGAAGGCGATGGCAGTGCTGCGCTTGCAGGATG GCAGCCATCCGCCATTTGGGGCGGAAGTGAAAAACGATAATCAACAACAAGTAGGGTTGGTTGATGACGAAGGTAATGTT TATCTGGCAGGCGTTAAACCGGGTGAACATATGACCGTTTTCTGGGAGGGGGAATCTCACTGCGATATCAGCCTGCCAGA CCCGTTACCGAATGACCTGTTCAATGGCTTGTTGTTACCATGCCAGCAAAAGGGGGGAAGTTCTCCCGTCATACCGCATG ATATTCAACCCGTCATTCAGGAGCAGACACAACAGGTGACACCAATGGAACCGCCGATGTCTGTTTCATCGAACCAATAA Protein sequence : MPEHSFLRLRGLSWWIALAISGSPFNALADDTIQFDGRFLDLKGNTKIDLGRFSQKGYVEPGKYNLRVHVNNQPLPDDYD IYWYATENDPNKSYACLSPELVAQFGLKEDIAKNLQWIRDGQCLNTALLAGTEISGDLGQSALLVSVPQAYLEYTDSEWD PPSRWDDGIPGLIADYSINAQTRHENGGDDTNDISGNGTVGVNVGPWRLRADWQSDYQHTRSNDDGDTDDSGTQKNWEWS RYYAWRALPSLKAKLSLGEDYLNSDIFDGFSYIGGSISTDDQMLPPNLRGYAPDISGVAHTTAKVTVTQMGRVIYETQVP AGPFRIQDIGDSVSGTLHVRIEEQNGQVQEYDVSTASMPFLTRPGQVRYKVTMGRPQNWDHQVAGSFFSGGEASWGIANG WSLYGGALADENYQSAALGLGRDLALLGALAFDVTHSRVQLDDNSVYGNKTLDGNSYRVSYAKDFDELNSRVTFAGYRFS EKNYMTMSEYLDANDDDRARTGNDKEMYMVTYNQNFTDARVSVYLNYSHHTYWDRQDQTNYNMMLSHYFNLGSLRNLSVS LTGYRYEYDKSADKGVYLSLSLPWGDNSTISYNGNYGSGADSNQVSLYHRIDDASHYTLSAGTSENHSSVDGYYSHDGTL AKVDLSANYHEGQYTSAGISLQGGATLTAHGGALHRTQNMGGTRLLIDADGVANVPVEGNGSAVYTNMFGKAVVADVNDY YRNQAYIDLNKLPENAEATKSVVQATLTEGAIGYRKFAVISGEKAMAVLRLQDGSHPPFGAEVKNDNQQQVGLVDDEGNV YLAGVKPGEHMTVFWEGESHCDISLPDPLPNDLFNGLLLPCQQKGGSSPVIPHDIQPVIQEQTQQVTPMEPPMSVSSNQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| prfC | CAD42029.1 | PrfC protein | Virulence | PAI II 536 | Protein | 4e-150 | 45 |
| papC | NP_755465.1 | PapC protein | Virulence | PAI I CFT073 | Protein | 5e-150 | 45 |
| papC_2 | NP_757034.1 | PapC protein | Virulence | PAI II CFT073 | Protein | 5e-150 | 45 |
| papC | YP_002414015.1 | Outer membrane usher protein PapC | Not tested | Not named | Protein | 4e-150 | 45 |
| papC | AAZ04424.1 | outer membrane usher protein | Virulence | PAI I APEC-O1 | Protein | 2e-148 | 44 |
| papC | YP_854254.1 | outer membrane usher protein PapC | Virulence | PAI I APEC-O1 | Protein | 2e-148 | 44 |
| pixC | CAE85159.1 | PixC protein | Not tested | PAI V 536 | Protein | 1e-153 | 44 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| yfcU | YP_002329981.1 | outer membrane usher protein | VFG1548 | Protein | 2e-150 | 45 |
| yfcU | YP_002329981.1 | outer membrane usher protein | VFG0884 | Protein | 2e-150 | 45 |
| yfcU | YP_002329981.1 | outer membrane usher protein | VFG0895 | Protein | 2e-150 | 45 |
