Gene Information

Name : E2348C_2119 (E2348C_2119)
Accession : YP_002329631.1
Strain : Escherichia coli E2348/69
Genome accession: NC_011601
Putative virulence/resistance : Unknown
Product : integrase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0582
EC number : -
Position : 2171614 - 2172882 bp
Length : 1269 bp
Strand : -
Note : -

DNA sequence :
ATGTCACTTACTGATACTAAAGTAAAAAATGCCAGACCAGCGGAAAAAGCCGTCAAGCTCACTGATGGATTTGGTCTCTA
CCTTCTTTTGCATCCCAATGGTTCAAAATACTGGCAGTTAGGCTATCGCTTCGATGGTAAACAGAAAGTGTTTTCCATTG
GTGTTTACCCTGCGGTTTCTCTTGCTGATGCCAGACAACGACGTGATGAAGCAAAAAAGCTGCTTGCTCAGGGAATCGAT
CCTAACGCTAAAAAACAGGCTGATGAAAAAGCTCTGCAGGAAAAGCGGGATAAAACCCGTTCGTTCCGTGTCGTCGCCAG
AAGCTGGTTTGCCACCAAAACAAAATGGTCTGAAGATTACGCCGATACGGTATGGAAGCGCCTTGAGACCTATGTATTCC
CGGATATTGGTGACAGCAACGTTTCAGATCTGGATACGGGTGATCTGCTTGTTCCGGTAAAAAAAGCAGAAACGCTTGGC
TATCTTGAAATTGCCATGCGGATCAAGCAATACATCACTGCCATCCTGCGTCACGCCGTCCAGCAAAAACTTATGCGCCA
TAATCCTGCTTACGATATGGAAGGTGCTGTGCAGAAACCAGAGACTGAGCACCGTCCCGCACTGGAGCTGGAAGAGATCC
CCCTGCTACTTGAACGTATTGATGCCTACAAAGGCCGTGGACTTACCACACTGGCGATTAAACTCAATCTGTTGATTTTC
ATTCGTTCCAGTGAACTCCGCTATGCACGATGGTCAGAAATCGACTTCAACAGTAAGTTATGGGTGATACCAGAAAAGCG
TGAAGTGATTGAGCGCGTCAAATATTCCACGCGTGGCGCAAAAATGAAACGCCAGCACTTTGTTCCCCTTTGCAGGCAGG
CTCTTAAGATACTGAAAGAGATCCGTCAGCTTACCTATGAAGAAGGTAATGACGCCGGATTAATTTTTACTGGATGTTAT
GACTCATTCAAACCCATGAGTGAAAACACCATCAACAAGGCGCTGCGTAAGATGGGCTATGACACCACGCAGGACATCTG
CGGTCATGGTTTCCGAACACTGGCATGTAGTGCTCTGATTGAATCAGGGCTATGGTCTAAAGATGCGGTAGAACTTCAGA
TGAGCCACAAGGAAAGCAACAGTGTGCGTGCTGCCTATACCCATAAGGCCAAACATCTTGAACAGAGAAGATTGATGTTA
CAGTGGTGGGCAGATTATCTTGATGCAAATCGGGATGGGATGGTCAGGCCGTTTGAGTTTGCTCAATAA

Protein sequence :
MSLTDTKVKNARPAEKAVKLTDGFGLYLLLHPNGSKYWQLGYRFDGKQKVFSIGVYPAVSLADARQRRDEAKKLLAQGID
PNAKKQADEKALQEKRDKTRSFRVVARSWFATKTKWSEDYADTVWKRLETYVFPDIGDSNVSDLDTGDLLVPVKKAETLG
YLEIAMRIKQYITAILRHAVQQKLMRHNPAYDMEGAVQKPETEHRPALELEEIPLLLERIDAYKGRGLTTLAIKLNLLIF
IRSSELRYARWSEIDFNSKLWVIPEKREVIERVKYSTRGAKMKRQHFVPLCRQALKILKEIRQLTYEEGNDAGLIFTGCY
DSFKPMSENTINKALRKMGYDTTQDICGHGFRTLACSALIESGLWSKDAVELQMSHKESNSVRAAYTHKAKHLEQRRLML
QWWADYLDANRDGMVRPFEFAQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
intB CAD42017.1 bacteriophage P4 integrase Not tested PAI II 536 Protein 3e-109 60
ECO111_3718 YP_003236059.1 putative integrase Not tested LEE Protein 1e-111 57
APECO1_3534 YP_854214.1 P4-like integrase Not tested PAI I APEC-O1 Protein 3e-113 57
S4822 NP_838459.1 P4-type integrase Not tested SHI-1 Protein 2e-113 57
int AAK00456.1 Int Not tested SHI-1 Protein 2e-105 57
SF2964 NP_708738.1 P4-type integrase Not tested SHI-1 Protein 2e-113 57
ORF_1 AAZ04412.1 phage integrase Not tested PAI I APEC-O1 Protein 2e-113 57
c5216 NP_757064.1 prophage P4 integrase Not tested PAI II CFT073 Protein 1e-113 57
int CAC81896.1 integrase Not tested LEE II Protein 2e-105 57
intP4 CAE85151.1 CP4 integrase protein Not tested PAI V 536 Protein 2e-113 57
ECO103_3550 YP_003223418.1 integrase Not tested LEE Protein 3e-113 57
ECO26_5300 YP_003232178.1 integrase Not tested LEE Protein 3e-113 57
int-phe AAL57571.1 CP4-like integrase Not tested LEE Protein 3e-113 57
int AAL51028.1 CP4-like integrase Not tested LEE Protein 3e-113 57
int-phe AAL60261.1 Int-phe Not tested LEE Protein 3e-113 57
ECUMN_3322 YP_002414004.1 integrase Not tested Not named Protein 8e-111 57
int AAK16198.1 Int Not tested PAI-I AL862 Protein 2e-113 57
int ADD91747.1 P4 integrase Not tested PAI-I AL862 Protein 2e-113 57
Z4313 NP_289539.1 pathogenicity island integrase Not tested OI-122 Protein 2e-112 57
SESS1296_03598 AFO66301.1 bacteriophage integrase Not tested SESS LEE Protein 5e-108 57
SESS1635_03816 AFO66367.1 bacteriophage integrase Not tested SESS LEE Protein 5e-108 57
int AAL51003.1 CP4-like integrase Not tested LEE Protein 3e-112 56
int AAT48697.1 CP4-like integrase Not tested PAI I 4787 Protein 2e-112 56
c3556 NP_755431.1 prophage P4 integrase Not tested PAI I CFT073 Protein 6e-112 56
APECO1_1051 YP_853069.1 phage integrase Not tested PAI IV APEC-O1 Protein 9e-70 51
int NP_458759.1 bacteriophage integrase Not tested SPI-7 Protein 1e-99 51
int NP_807963.1 bacteriophage integrase Not tested SPI-7 Protein 1e-99 51
intB AAD37509.1 P4-like integrase Not tested PAI IV 536 Protein 3e-78 50
int2 NP_993013.1 integrase Not tested HPI Protein 1e-98 50
int CAA08754.1 integrase Not tested HPI Protein 8e-99 50
int CAA21384.1 - Not tested HPI Protein 1e-98 50
int CAB59974.1 integrase Not tested HPI Protein 5e-99 50
STY4821 NP_458899.1 integrase Not tested SPI-10 Protein 4e-96 50
int YP_002346908.1 integrase Not tested HPI Protein 1e-98 50
y2393 NP_669700.1 prophage integrase Not tested HPI Protein 1e-98 50
unnamed ABR13507.1 phage integrase Not tested PAGI-6 Protein 7e-93 50
unnamed AAD17660.1 unknown Not tested HPI Protein 9e-96 49

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
E2348C_2119 YP_002329631.1 integrase VFG1536 Protein 2e-109 60
E2348C_2119 YP_002329631.1 integrase VFG0626 Protein 1e-113 57
E2348C_2119 YP_002329631.1 integrase VFG1693 Protein 3e-112 56