Gene Information

Name : E2348C_1088 (E2348C_1088)
Accession : YP_002328642.1
Strain : Escherichia coli E2348/69
Genome accession: NC_011601
Putative virulence/resistance : Unknown
Product : transposase Orf1 of IS100
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG4584
EC number : -
Position : 1147639 - 1148661 bp
Length : 1023 bp
Strand : +
Note : -

DNA sequence :
ATGGTCACTTTTGAGACAGTTATGGAAATTAAAATCCTGCACAAGCAGGGAATGAGTAGCCGGGCGATTGCCAGAGAACT
GGGGATCTCCCGCAATACCGTTAAACGTTATTTGCAGGCAAAATCTGAGCCGCCAAAATATACACCGCGACCTGCTGTTG
CTTCACTCCTGGATGAATACCGGGATTATATTCGTCAACGCATCGCCGATGCTCATCCTTACAAAATCCCGGCAACGGTA
ATCGCTCGCGAGATCAGAGACCAGGGATATCGTGGCGGAATGACCATTCTCAGGGCGTTCATTCGTTCTCTCTCGGTTCC
TCAGGAGCAGGAGCCTGCCGTTCGGTTCGAAACTGAACCCGGACGACAGATGCAGGTTGACTGGGGCACTATGCGTAATG
GTCGCTCACCGCTTCACGTGTTCGTTGCTGTTCTCGGATACAGCCGAATGTTGTACATCGAATTCACTGACAATATGCGT
TATGACACGCTGGAGACCTGCCATCGTAATGCGTTCCGCTTCTTTGGTGGTGTGCCGCGCGAAGTGTTGTATGACAATAT
GAAAACTGTGGTTCTGCAACGTGACGCATATCAGACCGGTCAGCACCGGTTCCATCCTTCGCTGTGGCAGTTCGGCAAGG
AGATGGGCTTCTCTCCCCGACTGTGTCGCCCCTTCAGGGCACAGACTAAAGGTAAGGTGGAACGGATGGTGCAGTACACC
CGTAACAGTTTTTACATCCCACTAATGACTCGCCTGCGCCCGATGGGGATCACTGTCGATGTTGAAACAGCCAACCGCCA
CGGTCTGCGCTGGCTGCACGATGTCGCTAACCAACGAAAGCATGAAACAATCCAGGCCCGTCCCTGCGATCGCTGGCTCG
AAGAGCAGCAGTCCATGCTGGCACTGCCTCCGGAGAAAAAAGAGTATGACGTGCATCCTGGTGAAAATCTGGTGAACTTC
GATAAACACCCCCTGCATCATCCACTCTCCATCTACGACTCATTCTGCAGAGGAGTGGCGTGA

Protein sequence :
MVTFETVMEIKILHKQGMSSRAIARELGISRNTVKRYLQAKSEPPKYTPRPAVASLLDEYRDYIRQRIADAHPYKIPATV
IAREIRDQGYRGGMTILRAFIRSLSVPQEQEPAVRFETEPGRQMQVDWGTMRNGRSPLHVFVAVLGYSRMLYIEFTDNMR
YDTLETCHRNAFRFFGGVPREVLYDNMKTVVLQRDAYQTGQHRFHPSLWQFGKEMGFSPRLCRPFRAQTKGKVERMVQYT
RNSFYIPLMTRLRPMGITVDVETANRHGLRWLHDVANQRKHETIQARPCDRWLEEQQSMLALPPEKKEYDVHPGENLVNF
DKHPLHHPLSIYDSFCRGVA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
y1093 CAD33720.1 ORF A protein Not tested PAI I 536 Protein 5e-164 99
s0035 CAD33773.1 ORF A protein Not tested PAI I 536 Protein 7e-165 99
y1093 YP_002346890.1 transposase for insertion sequence IS100 Not tested HPI Protein 1e-163 99
y1094 CAD42088.1 OrfA protein of IS100 transposase Not tested PAI II 536 Protein 7e-165 99
y2411 NP_669718.1 transposase Not tested HPI Protein 1e-163 99
orfA CAE85182.1 OrfA protein, transposase, IS100 Not tested PAI V 536 Protein 7e-165 99
YPTB1585 YP_070113.1 transposase Not tested HPI Protein 1e-163 99
y1094 CAC43410.1 IS100 transposase; transposase ORFA Not tested PAI III 536 Protein 7e-165 99
unnamed CAA21403.1 - Not tested HPI Protein 1e-163 99
unnamed CAB46599.1 IS100 transposase Not tested HPI Protein 1e-163 99
api83 CAF28557.1 transposase Not tested YAPI Protein 1e-163 99
unnamed AAG37051.1 unknown Not tested espC PAI Protein 1e-152 96

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
E2348C_1088 YP_002328642.1 transposase Orf1 of IS100 VFG1626 Protein 4e-165 99
E2348C_1088 YP_002328642.1 transposase Orf1 of IS100 VFG1607 Protein 4e-165 99
E2348C_1088 YP_002328642.1 transposase Orf1 of IS100 VFG1461 Protein 3e-164 99
E2348C_1088 YP_002328642.1 transposase Orf1 of IS100 VFG1514 Protein 4e-165 99
E2348C_1088 YP_002328642.1 transposase Orf1 of IS100 VFG0780 Protein 7e-153 96