Gene Information

Name : ABBFA_001962 (ABBFA_001962)
Accession : YP_002325865.1
Strain : Acinetobacter baumannii AB307-0294
Genome accession: NC_011595
Putative virulence/resistance : Resistance
Product : beta-lactamase PSE-2 precursor(beta lactamase OXA-10)
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG2602
EC number : 3.5.2.6
Position : 2099789 - 2100613 bp
Length : 825 bp
Strand : +
Note : [V] COG2602 beta-lactamase class D

DNA sequence : 
ATGAACATTAAAGCACTCTTACTTATAACAAGCGCTATTTTTATTTCAGCCTGCTCACCTTATATAGTGACTGCTAATCC
AAATCACAGTGCTTCAAAATCTGATGACAAAGCAGAGAAAATTAAAAATTTATTTAACGAAGCACACACTACGGGTGTTT
TAGTTATCCATCAAGGTCAAACTCAACAAAGCTATGGTAATGATCTTGCTCGTGCTTCGACCGAGTATGTACCTGCTTCG
ACCTTCAAAATGCTTAATGCTTTGATCGGCCTTGAGCACCATAAGGCAACCACCACAGAAGTATTTAAATGGGATGGGGA
AAAAAGGCTATTCCCAGAATGGGAAAAGAACATGACCCTAGGCGATGCTATGAAAGCTTCCGCTATTCCGGTTTATCAAG
ATTTAGCTCGTCGTATTGGACTTGAGCTCATGTCTAAGGAAGTGAAGCGTGTTGGTTATGGCAATGCAGATATCGGTACC
CAAGTCGATAATTTTTGGCTGGTGGGTCCTCTAAAAATTACTCCTCAGCAAGAGGCACAGTTTGCTTACAAGCTAGCTAA
TAAAACGCTTCCATTTAGCCAAAAAGTCCAAGATGAAGTGCAATCCATGCTATTCATAGAAGAAAAGAATGGAAATAAAA
TATACGCAAAAAGTGGTTGGGGATGGGATGTAAACCCACAAGTAGGCTGGTTAACTGGATGGGTTGTTCAGCCTCAAGGG
AATATTGTAGCGTTCTCCCTTAACTTAGAAATGAAAAAAGGAATACCTAGCTCTGTTCGAAAAGAGATTACTTATAAAAG
TTTAGAACAATTAGGTATTTTATAG

Protein sequence : 
MNIKALLLITSAIFISACSPYIVTANPNHSASKSDDKAEKIKNLFNEAHTTGVLVIHQGQTQQSYGNDLARASTEYVPAS
TFKMLNALIGLEHHKATTTEVFKWDGEKRLFPEWEKNMTLGDAMKASAIPVYQDLARRIGLELMSKEVKRVGYGNADIGT
QVDNFWLVGPLKITPQQEAQFAYKLANKTLPFSQKVQDEVQSMLFIEEKNGNKIYAKSGWGWDVNPQVGWLTGWVVQPQG
NIVAFSLNLEMKKGIPSSVRKEITYKSLEQLGIL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
oxa-Ab ACV89830.1 carbapenem-hydrolyzing oxacillinase OXA-69 Not tested AbaR6 Protein 4e-126 100
oxa-Ab ACV89832.1 carbapenem-hydrolyzing oxacillinase OXA-69 Not tested AbaR7 Protein 4e-126 100
oxa-Ab ADK35783.1 carbapenem-hydrolyzing oxacillinase OXA-69 Not tested AbaR8 Protein 4e-126 100
oxa23 AEO37447.1 class D beta-lactamase OXA-23 Not tested AbaR4 Protein 2e-80 58
oxa-23 AFV47968.1 class D beta-lactamase OXA-23 Not tested AbaR25 Protein 2e-80 58
oxa-23 AFV47996.1 class D beta-lactamase OXA-23 Not tested delta-AbaR25 Protein 2e-80 58
oxa23 AEZ06035.1 OXA-23 class D beta-lactamase Not tested Tn6167 Protein 6e-80 58
BJAB0715_00989 YP_008216137.1 Beta-lactamase class D Not tested AbaR27 Protein 2e-80 58
bla(Oxa-23) AFH57213.1 carbapenemase Not tested AbaR4b Protein 2e-80 58

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ABBFA_001962 YP_002325865.1 beta-lactamase PSE-2 precursor(beta lactamase OXA-10) AY750911.1.gene1.p01 Protein 3e-126 100
ABBFA_001962 YP_002325865.1 beta-lactamase PSE-2 precursor(beta lactamase OXA-10) NC_011595.7059224.p0 Protein 3e-126 100
ABBFA_001962 YP_002325865.1 beta-lactamase PSE-2 precursor(beta lactamase OXA-10) AY750909.1.gene1.p01 Protein 1e-124 99
ABBFA_001962 YP_002325865.1 beta-lactamase PSE-2 precursor(beta lactamase OXA-10) EF581285.1.gene1.p01 Protein 5e-125 99
ABBFA_001962 YP_002325865.1 beta-lactamase PSE-2 precursor(beta lactamase OXA-10) EF650033.1.gene1.p01 Protein 6e-126 99
ABBFA_001962 YP_002325865.1 beta-lactamase PSE-2 precursor(beta lactamase OXA-10) EU220744.1.gene1.p01 Protein 1e-119 99
ABBFA_001962 YP_002325865.1 beta-lactamase PSE-2 precursor(beta lactamase OXA-10) AM231719.1.gene1.p01 Protein 3e-125 99
ABBFA_001962 YP_002325865.1 beta-lactamase PSE-2 precursor(beta lactamase OXA-10) DQ392963.1.gene1.p01 Protein 7e-125 99
ABBFA_001962 YP_002325865.1 beta-lactamase PSE-2 precursor(beta lactamase OXA-10) AM279652.1.gene1.p01 Protein 3e-125 99
ABBFA_001962 YP_002325865.1 beta-lactamase PSE-2 precursor(beta lactamase OXA-10) EU019534.1.gene1.p01 Protein 4e-123 99
ABBFA_001962 YP_002325865.1 beta-lactamase PSE-2 precursor(beta lactamase OXA-10) HQ734813.1.gene1.p01 Protein 2e-124 99
ABBFA_001962 YP_002325865.1 beta-lactamase PSE-2 precursor(beta lactamase OXA-10) EF650036.1.gene1.p01 Protein 6e-126 99
ABBFA_001962 YP_002325865.1 beta-lactamase PSE-2 precursor(beta lactamase OXA-10) EF650038.1.gene1.p01 Protein 4e-126 99
ABBFA_001962 YP_002325865.1 beta-lactamase PSE-2 precursor(beta lactamase OXA-10) AB634250.1.gene1.p01 Protein 3e-124 99
ABBFA_001962 YP_002325865.1 beta-lactamase PSE-2 precursor(beta lactamase OXA-10) EF650035.1.gene1.p01 Protein 5e-124 99
ABBFA_001962 YP_002325865.1 beta-lactamase PSE-2 precursor(beta lactamase OXA-10) DQ309277.1.gene1.p01 Protein 3e-124 99
ABBFA_001962 YP_002325865.1 beta-lactamase PSE-2 precursor(beta lactamase OXA-10) EU019535.1.gene1.p01 Protein 1e-123 99
ABBFA_001962 YP_002325865.1 beta-lactamase PSE-2 precursor(beta lactamase OXA-10) AY750908.1.gene1.p01 Protein 3e-125 99
ABBFA_001962 YP_002325865.1 beta-lactamase PSE-2 precursor(beta lactamase OXA-10) EU019536.1.gene1.p01 Protein 3e-124 99
ABBFA_001962 YP_002325865.1 beta-lactamase PSE-2 precursor(beta lactamase OXA-10) DQ335566.1.gene1.p01 Protein 2e-125 99
ABBFA_001962 YP_002325865.1 beta-lactamase PSE-2 precursor(beta lactamase OXA-10) HQ734811.1.gene1.p01 Protein 3e-123 98
ABBFA_001962 YP_002325865.1 beta-lactamase PSE-2 precursor(beta lactamase OXA-10) DQ309276.1.gene1.p01 Protein 7e-124 98
ABBFA_001962 YP_002325865.1 beta-lactamase PSE-2 precursor(beta lactamase OXA-10) GQ853681.1.gene1.p1 Protein 9e-125 98
ABBFA_001962 YP_002325865.1 beta-lactamase PSE-2 precursor(beta lactamase OXA-10) DQ519088.1.gene1.p01 Protein 1e-124 98
ABBFA_001962 YP_002325865.1 beta-lactamase PSE-2 precursor(beta lactamase OXA-10) GQ853680.1.gene1.p1 Protein 3e-124 98
ABBFA_001962 YP_002325865.1 beta-lactamase PSE-2 precursor(beta lactamase OXA-10) HM113564.1.gene1.p01 Protein 2e-123 98
ABBFA_001962 YP_002325865.1 beta-lactamase PSE-2 precursor(beta lactamase OXA-10) HM570036.1.gene1.p01 Protein 4e-125 98
ABBFA_001962 YP_002325865.1 beta-lactamase PSE-2 precursor(beta lactamase OXA-10) AY750912.1.gene1.p01 Protein 2e-124 98
ABBFA_001962 YP_002325865.1 beta-lactamase PSE-2 precursor(beta lactamase OXA-10) HM113560.1.gene1.p01 Protein 6e-124 98
ABBFA_001962 YP_002325865.1 beta-lactamase PSE-2 precursor(beta lactamase OXA-10) JN603240.1.gene1.p1 Protein 7e-125 98
ABBFA_001962 YP_002325865.1 beta-lactamase PSE-2 precursor(beta lactamase OXA-10) HM113561.1.gene1.p01 Protein 3e-124 98
ABBFA_001962 YP_002325865.1 beta-lactamase PSE-2 precursor(beta lactamase OXA-10) HQ425495.1.gene1.p01 Protein 2e-123 98
ABBFA_001962 YP_002325865.1 beta-lactamase PSE-2 precursor(beta lactamase OXA-10) HQ998857.1.gene1.p01 Protein 1e-124 98
ABBFA_001962 YP_002325865.1 beta-lactamase PSE-2 precursor(beta lactamase OXA-10) EU547446.1.gene1.p1 Protein 5e-124 98
ABBFA_001962 YP_002325865.1 beta-lactamase PSE-2 precursor(beta lactamase OXA-10) HM113559.1.gene1.p01 Protein 1e-122 98
ABBFA_001962 YP_002325865.1 beta-lactamase PSE-2 precursor(beta lactamase OXA-10) FJ872530.1.gene1.p01 Protein 3e-124 98
ABBFA_001962 YP_002325865.1 beta-lactamase PSE-2 precursor(beta lactamase OXA-10) HQ425492.1.gene1.p01 Protein 1e-123 98
ABBFA_001962 YP_002325865.1 beta-lactamase PSE-2 precursor(beta lactamase OXA-10) AJ309734.2.gene1.p01 Protein 1e-124 98
ABBFA_001962 YP_002325865.1 beta-lactamase PSE-2 precursor(beta lactamase OXA-10) EF653400.1.gene1.p01 Protein 1e-124 98
ABBFA_001962 YP_002325865.1 beta-lactamase PSE-2 precursor(beta lactamase OXA-10) HM113562.1.gene1.p01 Protein 4e-124 98
ABBFA_001962 YP_002325865.1 beta-lactamase PSE-2 precursor(beta lactamase OXA-10) AY750913.1.gene1.p01 Protein 6e-125 98
ABBFA_001962 YP_002325865.1 beta-lactamase PSE-2 precursor(beta lactamase OXA-10) JN248564.1.gene1.p01 Protein 9e-124 98
ABBFA_001962 YP_002325865.1 beta-lactamase PSE-2 precursor(beta lactamase OXA-10) EF650032.1.gene1.p01 Protein 9e-125 98
ABBFA_001962 YP_002325865.1 beta-lactamase PSE-2 precursor(beta lactamase OXA-10) HM570035.1.gene1.p01 Protein 1e-124 98
ABBFA_001962 YP_002325865.1 beta-lactamase PSE-2 precursor(beta lactamase OXA-10) EU029998.1.gene2.p01 Protein 3e-123 98
ABBFA_001962 YP_002325865.1 beta-lactamase PSE-2 precursor(beta lactamase OXA-10) EU547445.1.gene1.p1 Protein 4e-125 98
ABBFA_001962 YP_002325865.1 beta-lactamase PSE-2 precursor(beta lactamase OXA-10) HM113563.1.gene1.p01 Protein 7e-124 98
ABBFA_001962 YP_002325865.1 beta-lactamase PSE-2 precursor(beta lactamase OXA-10) EU220745.1.gene1.p01 Protein 4e-119 98
ABBFA_001962 YP_002325865.1 beta-lactamase PSE-2 precursor(beta lactamase OXA-10) AY750910.1.gene1.p01 Protein 9e-125 98
ABBFA_001962 YP_002325865.1 beta-lactamase PSE-2 precursor(beta lactamase OXA-10) HM113558.1.gene1.p01 Protein 2e-123 98
ABBFA_001962 YP_002325865.1 beta-lactamase PSE-2 precursor(beta lactamase OXA-10) DQ519086.1.gene2.p01 Protein 3e-125 98
ABBFA_001962 YP_002325865.1 beta-lactamase PSE-2 precursor(beta lactamase OXA-10) DQ519089.1.gene1.p01 Protein 1e-124 98
ABBFA_001962 YP_002325865.1 beta-lactamase PSE-2 precursor(beta lactamase OXA-10) AY862132.1.gene1.p01 Protein 2e-124 98
ABBFA_001962 YP_002325865.1 beta-lactamase PSE-2 precursor(beta lactamase OXA-10) HQ425493.1.gene1.p01 Protein 2e-122 98
ABBFA_001962 YP_002325865.1 beta-lactamase PSE-2 precursor(beta lactamase OXA-10) AY750907.1.gene1.p01 Protein 7e-125 98
ABBFA_001962 YP_002325865.1 beta-lactamase PSE-2 precursor(beta lactamase OXA-10) DQ385606.gene.p01 Protein 1e-124 98
ABBFA_001962 YP_002325865.1 beta-lactamase PSE-2 precursor(beta lactamase OXA-10) EU375515.1.gene1.p1 Protein 4e-124 98
ABBFA_001962 YP_002325865.1 beta-lactamase PSE-2 precursor(beta lactamase OXA-10) HQ425494.1.gene1.p01 Protein 4e-123 98
ABBFA_001962 YP_002325865.1 beta-lactamase PSE-2 precursor(beta lactamase OXA-10) DQ519087.1.gene1.p01 Protein 6e-125 98
ABBFA_001962 YP_002325865.1 beta-lactamase PSE-2 precursor(beta lactamase OXA-10) HQ734812.1.gene1.p01 Protein 1e-123 98
ABBFA_001962 YP_002325865.1 beta-lactamase PSE-2 precursor(beta lactamase OXA-10) EF650034.1.gene1.p01 Protein 1e-124 98
ABBFA_001962 YP_002325865.1 beta-lactamase PSE-2 precursor(beta lactamase OXA-10) DQ888718.1.gene1.p01 Protein 4e-124 97
ABBFA_001962 YP_002325865.1 beta-lactamase PSE-2 precursor(beta lactamase OXA-10) EF650037.1.gene1.p01 Protein 2e-124 97
ABBFA_001962 YP_002325865.1 beta-lactamase PSE-2 precursor(beta lactamase OXA-10) EU547447.1.gene1.p1 Protein 2e-124 97
ABBFA_001962 YP_002325865.1 beta-lactamase PSE-2 precursor(beta lactamase OXA-10) GQ853679.1.gene1.p1 Protein 3e-124 97
ABBFA_001962 YP_002325865.1 beta-lactamase PSE-2 precursor(beta lactamase OXA-10) JN215211.1.gene1.p01 Protein 2e-124 97
ABBFA_001962 YP_002325865.1 beta-lactamase PSE-2 precursor(beta lactamase OXA-10) DQ491200.1.gene1.p01 Protein 2e-124 97
ABBFA_001962 YP_002325865.1 beta-lactamase PSE-2 precursor(beta lactamase OXA-10) EF534256.2.gene1.p01 Protein 7e-83 65
ABBFA_001962 YP_002325865.1 beta-lactamase PSE-2 precursor(beta lactamase OXA-10) AF509241.1.gene1.p01 Protein 2e-82 65
ABBFA_001962 YP_002325865.1 beta-lactamase PSE-2 precursor(beta lactamase OXA-10) NC_012813.7996741.p0 Protein 2e-82 65
ABBFA_001962 YP_002325865.1 beta-lactamase PSE-2 precursor(beta lactamase OXA-10) NC_013506.8571544.p0 Protein 2e-82 65
ABBFA_001962 YP_002325865.1 beta-lactamase PSE-2 precursor(beta lactamase OXA-10) AF201827.1.gene1.p01 Protein 2e-82 65
ABBFA_001962 YP_002325865.1 beta-lactamase PSE-2 precursor(beta lactamase OXA-10) AJ239129.2.gene1.p01 Protein 2e-82 65
ABBFA_001962 YP_002325865.1 beta-lactamase PSE-2 precursor(beta lactamase OXA-10) NC_013277.8458023.p0 Protein 2e-82 65
ABBFA_001962 YP_002325865.1 beta-lactamase PSE-2 precursor(beta lactamase OXA-10) AF201826.1.gene1.p01 Protein 4e-82 64
ABBFA_001962 YP_002325865.1 beta-lactamase PSE-2 precursor(beta lactamase OXA-10) AM991978.1.gene1.p01 Protein 5e-82 64
ABBFA_001962 YP_002325865.1 beta-lactamase PSE-2 precursor(beta lactamase OXA-10) HQ122933.1.gene1.p01 Protein 8e-79 59
ABBFA_001962 YP_002325865.1 beta-lactamase PSE-2 precursor(beta lactamase OXA-10) HM488988.1.gene1.p1 Protein 6e-81 58
ABBFA_001962 YP_002325865.1 beta-lactamase PSE-2 precursor(beta lactamase OXA-10) HM488989.1.gene1.p1 Protein 1e-80 58
ABBFA_001962 YP_002325865.1 beta-lactamase PSE-2 precursor(beta lactamase OXA-10) AF201828.gene.p01 Protein 1e-80 58
ABBFA_001962 YP_002325865.1 beta-lactamase PSE-2 precursor(beta lactamase OXA-10) FJ194494.1.gene1.p01 Protein 2e-79 58
ABBFA_001962 YP_002325865.1 beta-lactamase PSE-2 precursor(beta lactamase OXA-10) HM488990.1.gene1.p1 Protein 9e-81 58
ABBFA_001962 YP_002325865.1 beta-lactamase PSE-2 precursor(beta lactamase OXA-10) HM488987.1.gene1.p1 Protein 3e-80 58
ABBFA_001962 YP_002325865.1 beta-lactamase PSE-2 precursor(beta lactamase OXA-10) HM488986.1.gene1.p1 Protein 8e-81 58
ABBFA_001962 YP_002325865.1 beta-lactamase PSE-2 precursor(beta lactamase OXA-10) HM488992.1.gene1.p1 Protein 2e-80 58
ABBFA_001962 YP_002325865.1 beta-lactamase PSE-2 precursor(beta lactamase OXA-10) AY762325.1.gene1.p01 Protein 1e-80 58
ABBFA_001962 YP_002325865.1 beta-lactamase PSE-2 precursor(beta lactamase OXA-10) AY795964.gene.p01 Protein 9e-81 58
ABBFA_001962 YP_002325865.1 beta-lactamase PSE-2 precursor(beta lactamase OXA-10) JN638887.1.gene1.p01 Protein 3e-80 58
ABBFA_001962 YP_002325865.1 beta-lactamase PSE-2 precursor(beta lactamase OXA-10) NC_011586.7044972.p0 Protein 9e-81 58
ABBFA_001962 YP_002325865.1 beta-lactamase PSE-2 precursor(beta lactamase OXA-10) HM488991.1.gene1.p1 Protein 3e-80 58
ABBFA_001962 YP_002325865.1 beta-lactamase PSE-2 precursor(beta lactamase OXA-10) AY288523.1.gene1.p01 Protein 5e-79 57
ABBFA_001962 YP_002325865.1 beta-lactamase PSE-2 precursor(beta lactamase OXA-10) AY665723.gene.p01 Protein 2e-71 49
ABBFA_001962 YP_002325865.1 beta-lactamase PSE-2 precursor(beta lactamase OXA-10) GU831575.1.gene1.p01 Protein 1e-70 49
ABBFA_001962 YP_002325865.1 beta-lactamase PSE-2 precursor(beta lactamase OXA-10) EF102240.1.gene13.p0 Protein 3e-71 49
ABBFA_001962 YP_002325865.1 beta-lactamase PSE-2 precursor(beta lactamase OXA-10) NC_010481.6155789.p0 Protein 2e-71 49
ABBFA_001962 YP_002325865.1 beta-lactamase PSE-2 precursor(beta lactamase OXA-10) DQ519090.1.gene1.p01 Protein 3e-71 49
ABBFA_001962 YP_002325865.1 beta-lactamase PSE-2 precursor(beta lactamase OXA-10) AY306130.1.gene1.p01 Protein 1e-44 43