Gene Information

Name : kdsB (ABBFA_001919)
Accession : YP_002325822.1
Strain : Acinetobacter baumannii AB307-0294
Genome accession: NC_011595
Putative virulence/resistance : Virulence
Product : 3-deoxy-manno-octulosonate cytidylyltransferase
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG1212
EC number : 2.7.7.38
Position : 2055553 - 2056314 bp
Length : 762 bp
Strand : -
Note : CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS

DNA sequence : 
ATGAAACATATCGTCATTCCAGCACGCTTCTCAAGTTCGCGTTTGCCAGGTAAGCCATTGTTACTTATTCATGATCGTCC
TATGATTTTACGAGTGGTGGACCAAGCAAAAAAAGTTGAAGGTTTCGATGACCTATGTGTAGCAACGGACGATGAACGTA
TCGCTGAAATATGTTGTGCAGAGGGCGTTGATGTTGTTTTAACAAGTGCAGACCATCCATCGGGAACAGATCGTTTAAGT
GAAGTTGCTCGTATTAAAGGATGGGATGCCGATGACATTATTGTAAACGTACAAGGTGATGAGCCATTATTGCCAGCCCA
GCTTGTTCAGCAAGTTGCAAAGCTTTTGGTTGATAAGCCAAATTGTTCAATGTCTACATTATGTGAGCCTATTCATGCGT
TGGATGAATTTCAGCGTGATAGTATCGTAAAAGTAGTCATGTCTAAACAAAATGAAGCATTATATTTTAGTCGTGCAACT
ATTCCTTATGATCGAGACAGTGCTAAACAAGCTGAACCAACTTTACATAGCCAAGCATTTCGTCATTTAGGTTTATATGC
TTATCGTGTGAGCTTATTACAAGAATATGTTACATGGGAAATGGGTAAACTTGAAAAGCTCGAGAGTCTTGAGCAATTGC
GTGTTTTAGAAAATGGACACCGTATTGCTATTGCTGTAGCAGAAGCGAATTTACCACCAGGTGTTGACACTCAAGCAGAT
CTTGATCGTTTAAATAATATGCCTGTTGAGTCTTTTGAGTAA

Protein sequence : 
MKHIVIPARFSSSRLPGKPLLLIHDRPMILRVVDQAKKVEGFDDLCVATDDERIAEICCAEGVDVVLTSADHPSGTDRLS
EVARIKGWDADDIIVNVQGDEPLLPAQLVQQVAKLLVDKPNCSMSTLCEPIHALDEFQRDSIVKVVMSKQNEALYFSRAT
IPYDRDSAKQAEPTLHSQAFRHLGLYAYRVSLLQEYVTWEMGKLEKLESLEQLRVLENGHRIAIAVAEANLPPGVDTQAD
LDRLNNMPVESFE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
kpsU YP_854332.1 3-deoxy-manno-octulosonate cytidylyltransferase Not tested PAI I APEC-O1 Protein 5e-35 43
kpsU CAE85213.1 KpsU protein Virulence PAI V 536 Protein 5e-35 43
kpsU AAZ04469.1 CMP-KDO synthetase Virulence PAI I APEC-O1 Protein 4e-35 43