Gene Information

Name : Blon_0560 (Blon_0560)
Accession : YP_002322050.1
Strain : Bifidobacterium longum JCM 1222
Genome accession: NC_011593
Putative virulence/resistance : Virulence
Product : ABC transporter
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 633240 - 634082 bp
Length : 843 bp
Strand : +
Note : PFAM: ABC transporter; SMART: AAA ATPase; KEGG: cef:CE0932 ABC transporter ATP-binding protein

DNA sequence : 
ATGGCCGCCGCAATCAACCGCGCAATGCCGAGCCTTACCTGCCTTGACACCGGGGAACAGGCGATATTGACGATCGTCGA
CGCGACACGTACGCATGGCGACGGCGCGCGCAGGGTCGTCGCTCTCAGCCATGCGAATCTAATACTTCGCTCCGGGGAGT
TCGTGGCCGTAATGGGACCGTCCGGTTCGGGCAAGTCCACGTTGCTCAACCTTGCCGGGGGATTGGACACGCCGTCTTCA
GGCAAAGTGCTGGTCGAGGGCCGCGATCTCGCTTCGCTGAACGTTGCCCGGCGTGCCGCGATTCGACGGCGGTCGATTGG
CTACGTGTTTCAGGATTTCAATCTGCTGCCGTCGTTGAACGCCATCGAGAACGTCTCGTTCCCGTTGGAACTGGACGGCT
GGCCAATCCGCAAGGCGCGTAAGGCTGCATTGGAGGCCTTGCAAGAGACGGGCGTCGCTGAACTGGCGCTCCGTCGGCCT
GAGGACATGTCGGGAGGTCAGGCGCAGCGTGTGGCCATCGCCCGAGCTTTGGTGGGCCGACGCCGCCTGCTGCTGGCCGA
CGAGCCGACCGGCGCATTGGATTCCGCTGCCGGCACGAAGGTCATGGAGGTACTGCGCAGCCGTGCCGACGCGGGCTGTG
CTGTGCTGATGGTCACGCATGAACCTCGCTTTGCCGCTTGGGCCGATCGTACGGTGTTCATTCGCGACGGTCGCATCACC
GACGAGACAGGAGCGACCGACTTTGACGAACTGTTCACCTGCGATGGTGAAGATGATGACGATGCCGGCGATGCGCGCAA
CAGCTCGCAACAGAACTTTCGCAACAATCCCGGGGAACAGTGA

Protein sequence : 
MAAAINRAMPSLTCLDTGEQAILTIVDATRTHGDGARRVVALSHANLILRSGEFVAVMGPSGSGKSTLLNLAGGLDTPSS
GKVLVEGRDLASLNVARRAAIRRRSIGYVFQDFNLLPSLNAIENVSFPLELDGWPIRKARKAALEALQETGVAELALRRP
EDMSGGQAQRVAIARALVGRRRLLLADEPTGALDSAAGTKVMEVLRSRADAGCAVLMVTHEPRFAAWADRTVFIRDGRIT
DETGATDFDELFTCDGEDDDDAGDARNSSQQNFRNNPGEQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-20 43
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 4e-22 41
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-22 41
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-22 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Blon_0560 YP_002322050.1 ABC transporter NC_008702.1.4606598. Protein 1e-25 47
Blon_0560 YP_002322050.1 ABC transporter NC_012469.1.7686878. Protein 4e-33 46
Blon_0560 YP_002322050.1 ABC transporter CP001581.1.gene798.p Protein 8e-27 44
Blon_0560 YP_002322050.1 ABC transporter CP001581.1.gene598.p Protein 1e-26 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Blon_0560 YP_002322050.1 ABC transporter VFG2059 Protein 3e-07 41