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Name : lysS (Aflv_0073) Accession : YP_002314442.1 Strain : Anoxybacillus flavithermus WK1 Genome accession: NC_011567 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : - Position : 82006 - 83490 bp Length : 1485 bp Strand : + Note : class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA DNA sequence : ATGTCGCATGAGGAATTAAATGATCAGCTATTAGTTCGTCGTGAAAAGTTACATAAGTTGCGTGAAAAAGGGATCGATCC ATTTGGAAAACGATTCGAGCGTACACATCAAGCAGAAGAATTGTTTACATTATACGGTCATTTATCAAAAGAAGAGTTGG AAGAAAAGCAAATTCATGTTTCTATCGCTGGTCGCATTATGACGAAGCGCGGGAAAGGGAAAGCGGGATTTGCTCATATT CAAGATTTGACGGGACAAATTCAAATTTATGTGCGCAAAGACGATGTTGGTGAAGAGCAGTATGAAATTTTCGATACGTC AGATTTAGGAGATATTGTCGGTGTACAAGGAACAGTATTCAAAACAAAAGTGGGAGAATTGTCTATCAAGGTACACTCGT ATGAAATGTTGACGAAATCGTTGCGCCCGCTCCCTGAGAAATATCACGGGCTCAAAGATATCGAGCAACGCTACCGCCAA CGCTACCTCGATTTAATTATGAATCCAGAAAGTAAAAAAACGTTTATTACACGCAGTTTAATTATTCAGTCGATGCGTCG CTATTTAGATCAAAAAGGATATTTAGAAGTAGAGACGCCGATGATGCACTCAATTGCCGGAGGAGCTGCAGCCCGTCCAT TTATTACGCACCATAACGCTCTAGATATGACATTGTATATGCGTATTGCAATTGAATTACATTTAAAACGTTTAATTGTA GGTGGATTAGAGAAAGTGTACGAAATCGGCCGTGTATTCCGAAACGAAGGCATTTCAACACGTCACAATCCAGAGTTTAC GATGCTTGAGCTTTACGAGGCTTATGCTGATTACACTGATATTATGAGATTAACAGAAGATATGATTGCACATATTGCTC AAGAAGTGCTTGGAACGACAAAAATCCAATATGGAGAACATGAAGTAGATTTAACACCGTCATGGAAACGACTTCATATG GTCGATGCGATTAAAGATTATGTGGGTGTTGACTTCTGGAAGCACATGAGCGATGAAGAAGCGCGTCAATTGGCGAAAGA GCATGGAGTAGAAGTAGCTCCACATATGACATTCGGTCATATCGTAAATGAATTTTTCGAACAAAAAGTAGAACAACATC TTATTCAGCCAACATTTATTTATGGGCACCCAGTTGAGATTTCGCCTTTAGCGAAAAAAAATCCAGAAGATCCTCGTTTC ACAGATCGATTTGAACTATTTATCGTTGCACGTGAGCATGCAAATGCATTCACAGAATTAAATGACCCAATCGATCAACG TGAACGATTTGAAGCGCAGTTAAGAGAAAAAGAACAAGGAAACGACGAAGCGCATGAGATGGACGAAGATTTTATCGAAG CATTAGAATACGGGATGCCACCAACGGGTGGGTTAGGAATTGGCATTGATCGTCTTGTTATGTTGTTAACGAACTCTCCA TCGATCCGCGATGTATTGTTATTCCCTCAAATGCGTCATAAATAA Protein sequence : MSHEELNDQLLVRREKLHKLREKGIDPFGKRFERTHQAEELFTLYGHLSKEELEEKQIHVSIAGRIMTKRGKGKAGFAHI QDLTGQIQIYVRKDDVGEEQYEIFDTSDLGDIVGVQGTVFKTKVGELSIKVHSYEMLTKSLRPLPEKYHGLKDIEQRYRQ RYLDLIMNPESKKTFITRSLIIQSMRRYLDQKGYLEVETPMMHSIAGGAAARPFITHHNALDMTLYMRIAIELHLKRLIV GGLEKVYEIGRVFRNEGISTRHNPEFTMLELYEAYADYTDIMRLTEDMIAHIAQEVLGTTKIQYGEHEVDLTPSWKRLHM VDAIKDYVGVDFWKHMSDEEARQLAKEHGVEVAPHMTFGHIVNEFFEQKVEQHLIQPTFIYGHPVEISPLAKKNPEDPRF TDRFELFIVAREHANAFTELNDPIDQRERFEAQLREKEQGNDEAHEMDEDFIEALEYGMPPTGGLGIGIDRLVMLLTNSP SIRDVLLFPQMRHK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 3e-126 | 53 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_002314442.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 1e-126 | 53 |
