Gene Information

Name : yycF (Aflv_2840)
Accession : YP_002317178.1
Strain : Anoxybacillus flavithermus WK1
Genome accession: NC_011567
Putative virulence/resistance : Virulence
Product : OmpR family DNA-binding response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 2825650 - 2826360 bp
Length : 711 bp
Strand : -
Note : -

DNA sequence : 
ATGTACATGGAGAAAAAAATTTTAGTTGTCGATGACGAAAAGCCGATTGCTGATATTTTGCAATTTAATTTAAGAAAAGA
AGGATACGATGTGCATTGTGCATATGACGGTGTGGAAGCGCTACAAAAGGTAGAAGACATTCAGCCCGATTTAATTTTAT
TAGATATTATGCTGCCGCAAAAAGACGGCATGGAAGTATGCCGAGAAATTCGTAAAAAATATGATATGCCGATCATTATG
TTGACAGCCAAAGACTCTGAAATTGATAAAGTGCTTGGGCTAGAACTTGGTGCAGACGATTATGTGACGAAGCCGTTTAG
CACACGTGAACTGTTAGCGCGTGTCAAAGCGAATTTACGTCGCCACCAACAAAGACAAGAACAAGATGTAAAAGAAATGA
GCGAAATAAAAATTGGCCCGCTCACGATTCACCCAGATGCTTATACGGTATCGAAACGCGGAGAACATATTGAGCTAACA
CATCGAGAATTTGAACTACTTCACTATTTAGCAAAACATATTGGACAGGTGATGACACGGGAACATTTACTGCAAACGGT
ATGGGGATACGACTATTTTGGCGATGTGCGTACCGTGGATGTCACCGTTCGACGTTTGCGTGAAAAAATTGAAGACAACC
CTTCACATCCAACGTGGATTGTTACAAGACGAGGGGTAGGATATTATTTACGAAATCCGGAACAGGAGTAA

Protein sequence : 
MYMEKKILVVDDEKPIADILQFNLRKEGYDVHCAYDGVEALQKVEDIQPDLILLDIMLPQKDGMEVCREIRKKYDMPIIM
LTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQRQEQDVKEMSEIKIGPLTIHPDAYTVSKRGEHIELT
HREFELLHYLAKHIGQVMTREHLLQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPTWIVTRRGVGYYLRNPEQE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 6e-33 42
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 2e-33 42
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 1e-27 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yycF YP_002317178.1 OmpR family DNA-binding response regulator NC_012469.1.7685629. Protein 1e-64 68
yycF YP_002317178.1 OmpR family DNA-binding response regulator NC_007793.3914279.p0 Protein 4e-55 55
yycF YP_002317178.1 OmpR family DNA-binding response regulator NC_002952.2859905.p0 Protein 5e-55 55
yycF YP_002317178.1 OmpR family DNA-binding response regulator NC_007622.3794472.p0 Protein 3e-55 55
yycF YP_002317178.1 OmpR family DNA-binding response regulator NC_002745.1124361.p0 Protein 4e-55 55
yycF YP_002317178.1 OmpR family DNA-binding response regulator NC_009782.5559369.p0 Protein 4e-55 55
yycF YP_002317178.1 OmpR family DNA-binding response regulator NC_002951.3237708.p0 Protein 4e-55 55
yycF YP_002317178.1 OmpR family DNA-binding response regulator NC_003923.1003749.p0 Protein 4e-55 55
yycF YP_002317178.1 OmpR family DNA-binding response regulator NC_002758.1121668.p0 Protein 4e-55 55
yycF YP_002317178.1 OmpR family DNA-binding response regulator NC_009641.5332272.p0 Protein 4e-55 55
yycF YP_002317178.1 OmpR family DNA-binding response regulator NC_013450.8614421.p0 Protein 4e-55 55
yycF YP_002317178.1 OmpR family DNA-binding response regulator HE999704.1.gene2815. Protein 9e-47 52
yycF YP_002317178.1 OmpR family DNA-binding response regulator NC_012469.1.7686381. Protein 3e-43 51
yycF YP_002317178.1 OmpR family DNA-binding response regulator AE016830.1.gene1681. Protein 5e-44 47
yycF YP_002317178.1 OmpR family DNA-binding response regulator FJ349556.1.orf0.gene Protein 4e-38 47
yycF YP_002317178.1 OmpR family DNA-binding response regulator AE000516.2.gene3505. Protein 4e-39 47
yycF YP_002317178.1 OmpR family DNA-binding response regulator AF155139.2.orf0.gene Protein 2e-37 47
yycF YP_002317178.1 OmpR family DNA-binding response regulator AM180355.1.gene1830. Protein 8e-40 46
yycF YP_002317178.1 OmpR family DNA-binding response regulator NC_003923.1003417.p0 Protein 5e-37 45
yycF YP_002317178.1 OmpR family DNA-binding response regulator NC_013450.8614146.p0 Protein 5e-37 45
yycF YP_002317178.1 OmpR family DNA-binding response regulator NC_002951.3238224.p0 Protein 5e-37 45
yycF YP_002317178.1 OmpR family DNA-binding response regulator NC_007793.3914065.p0 Protein 5e-37 45
yycF YP_002317178.1 OmpR family DNA-binding response regulator NC_002758.1121390.p0 Protein 5e-37 45
yycF YP_002317178.1 OmpR family DNA-binding response regulator NC_010079.5776364.p0 Protein 5e-37 45
yycF YP_002317178.1 OmpR family DNA-binding response regulator NC_002952.2859858.p0 Protein 5e-37 45
yycF YP_002317178.1 OmpR family DNA-binding response regulator NC_007622.3794948.p0 Protein 5e-37 45
yycF YP_002317178.1 OmpR family DNA-binding response regulator BAC0039 Protein 2e-31 45
yycF YP_002317178.1 OmpR family DNA-binding response regulator NC_002695.1.916589.p Protein 2e-31 45
yycF YP_002317178.1 OmpR family DNA-binding response regulator CP000034.1.gene2186. Protein 2e-31 45
yycF YP_002317178.1 OmpR family DNA-binding response regulator CP004022.1.gene3215. Protein 9e-36 44
yycF YP_002317178.1 OmpR family DNA-binding response regulator CP001138.1.gene2239. Protein 4e-30 44
yycF YP_002317178.1 OmpR family DNA-binding response regulator CP001918.1.gene3444. Protein 3e-31 44
yycF YP_002317178.1 OmpR family DNA-binding response regulator BAC0596 Protein 4e-30 44
yycF YP_002317178.1 OmpR family DNA-binding response regulator HE999704.1.gene1528. Protein 3e-29 43
yycF YP_002317178.1 OmpR family DNA-binding response regulator AF130997.1.orf0.gene Protein 9e-38 43
yycF YP_002317178.1 OmpR family DNA-binding response regulator DQ212986.1.gene4.p01 Protein 1e-38 43
yycF YP_002317178.1 OmpR family DNA-binding response regulator AF162694.1.orf4.gene Protein 8e-34 43
yycF YP_002317178.1 OmpR family DNA-binding response regulator CP001918.1.gene5135. Protein 7e-28 43
yycF YP_002317178.1 OmpR family DNA-binding response regulator AE015929.1.gene1106. Protein 1e-31 43
yycF YP_002317178.1 OmpR family DNA-binding response regulator CP004022.1.gene1676. Protein 4e-28 43
yycF YP_002317178.1 OmpR family DNA-binding response regulator BAC0125 Protein 7e-30 42
yycF YP_002317178.1 OmpR family DNA-binding response regulator CP001485.1.gene721.p Protein 4e-28 42
yycF YP_002317178.1 OmpR family DNA-binding response regulator CP000647.1.gene4257. Protein 2e-31 42
yycF YP_002317178.1 OmpR family DNA-binding response regulator CP000034.1.gene3834. Protein 2e-31 42
yycF YP_002317178.1 OmpR family DNA-binding response regulator NC_002695.1.915041.p Protein 2e-31 42
yycF YP_002317178.1 OmpR family DNA-binding response regulator BAC0533 Protein 2e-31 42
yycF YP_002317178.1 OmpR family DNA-binding response regulator CP000647.1.gene2531. Protein 7e-30 42
yycF YP_002317178.1 OmpR family DNA-binding response regulator NC_014475.1.orf0.gen Protein 6e-37 41
yycF YP_002317178.1 OmpR family DNA-binding response regulator EU250284.1.orf4.gene Protein 1e-34 41
yycF YP_002317178.1 OmpR family DNA-binding response regulator NC_005054.2598277.p0 Protein 6e-37 41
yycF YP_002317178.1 OmpR family DNA-binding response regulator CP001138.1.gene4273. Protein 3e-31 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yycF YP_002317178.1 OmpR family DNA-binding response regulator VFG1389 Protein 6e-31 43
yycF YP_002317178.1 OmpR family DNA-binding response regulator VFG1390 Protein 2e-36 42
yycF YP_002317178.1 OmpR family DNA-binding response regulator VFG1702 Protein 2e-33 42
yycF YP_002317178.1 OmpR family DNA-binding response regulator VFG1563 Protein 1e-33 42
yycF YP_002317178.1 OmpR family DNA-binding response regulator VFG0596 Protein 5e-28 41