Gene Information

Name : clpE (Aflv_1984)
Accession : YP_002316328.1
Strain : Anoxybacillus flavithermus WK1
Genome accession: NC_011567
Putative virulence/resistance : Virulence
Product : ATP-dependent Clp protease-like protein
Function : -
COG functional category : O : Posttranslational modification, protein turnover, chaperones
COG ID : COG0542
EC number : -
Position : 1959742 - 1961907 bp
Length : 2166 bp
Strand : -
Note : class III stress gene

DNA sequence :
TTGAAAGTCAAAGAAGGTCAAATTATAATAAAGACAGAAAGGTCAAATATAGTCAAAGTCAAAAGGAGGTTGGTGCCTAT
GATGTGCCAAGTATGTAAACAAAATAAAGCAAACGTCTTTTTACACGTGCAAGTAAACAATGAAAAACAACAATTACACC
TTTGCGATGCATGCTATGCAAAGCAAAAACAACAATTAAAAGTGCCAGCAGGATTCCACTTCGATCGTCTCGACCAATGG
TTCTCCGACTTTTTCGCACCGCTTACAGAACATTCCCGTATCGAGCAACAAGTACACCAAGAACAACCGAAGCGAAACGG
CTTGCTTGATCAATTCGGTCGCAACTTAACACAACTTGCGAGAGCAGGACTTATCGATCCGGTTATCGGACGCGAAAAAG
AAATTGAACGCGTCATTGAAATTTTAAATCGCCGCAATAAAAACAACCCAGTATTAATCGGTGAACCGGGCGTCGGTAAA
ACAGCGATCGTAGAAGGATTAGCGCTTAAAATTGCCGAAGGATCTGTTCCGACGAAATTGTTAAATAAAGAAGTGTACGT
GCTTGATGTTGCGTCGTTAGTCGCAAACACAGGCATTCGCGGTCAATTTGAAGAACGAATGAAGCAATTAATTGCCGAAT
TGCAACAACGGAAAAACGTCATTTTATTCATCGATGAAATTCATTTACTCGTCGGAGCGGGTTCGGCAGAAGGCTCGATG
GACGCAAGCAACATATTAAAACCGACGCTTGCTCGCGGCGAATTACAAATCATCGGCGCAACAACGTTAAAAGAATATCG
TCAAATCGAAAAAGACGCTGCGCTTGAACGCCGTTTCCAACCCGTCATCGTTCATGAACCGACGATCGAACAGGCGATTA
ACATGTTAAAAGGCATTCAGCCAAAATACGAACAATTCCATCAAGTGAAATATACAGATGAAGCGATTCACGCCTGCGTC
ACGTTGTCACATCGCTACATTCAAGATCGCTTCCTCCCTGACAAAGCGATTGACTTACTAGACGAAGCGGGCTCAAAAGT
AAGCTTAAAAGCGACACCAACCAACAAAGAAGCGATCGAACAACGTCTCGAACAAATCAAAAAAGAAAAAGAAAAAGCCG
CCCAAGAAGAAAATTACGAACTGGCAGCAAAATTGCGCACCGAAGAATTACAGCTTGAAAAACAATTGCAACAAAACGGA
CAAGCTGAACAACCGATCGTCGATGTCGCCCATATTCAACAAATCATTGAAGAAAAAACAGGCATTCCAGTCGGCAAATT
ACAAGCTGAGGAACAAACGAAAATGAAACATTTAGAAGAAAACTTAGCGAAAAAAGTGATCGGGCAAGAAGAAGCGGTGA
GAAAAATCGCGAAAGCCATTCGCAGAAGCCGCGCTGGCTTGAAAGCGAAAAACCGTCCGATCGGTTCGTTCTTATTCGTC
GGTCCGACTGGCGTCGGTAAAACAGAATTATCGAAGACGCTTGCTGAACAATTGTTTGGCTCAACAGATGCGATGATTCG
CTTAGATATGAGCGAATACATGGAAAAACATGCTGTATCGAAACTTATCGGTGCACCTCCTGGCTACGTTGGTCACGAAG
AAGCCGGTCAATTAACGGAAAAAGTGCGACGCAATCCTTACAGCATCATCTTGCTTGATGAAATGGAAAAAGCGCATCCA
GATGTGCAACATATGTTCTTACAAATTTTAGAAGACGGTCGTTTAACGGATAGCCAAGGGCGTACCGTCAGCTTTAAAGA
TACGGTCATCATTATGACATCAAACGCCGGTACGATCGGAGAAGGTGACTTACTTCAACGCCTCAGCCTATACTTTAAAC
CAGAATTTTTAAACCGTCTCGACGCCATTGTCGAATTTAAACCGCTTGAAAAAGCGCATATGTTGCAAATCGTTGACCTT
ATGCTTGCGGAATTGCAACGCACGCTTGATGAACAACATATCACGATGACGATTAGCGACAAAGCGAAAGAAAAATTAGC
TGAACTCGGCTATCATCCAACGTTCGGTGCCCGTCCGCTCCGCCGCGTCATGCAAGAACATGTCGAAGATCAAATTGCCG
ACGTGTTGCTTGATGAGCATGATGTGCGCACGATTCATATCGACGTAGAGGACGATCGCATCGTCGTAAAAGCTGAAAAA
GCCTAA

Protein sequence :
MKVKEGQIIIKTERSNIVKVKRRLVPMMCQVCKQNKANVFLHVQVNNEKQQLHLCDACYAKQKQQLKVPAGFHFDRLDQW
FSDFFAPLTEHSRIEQQVHQEQPKRNGLLDQFGRNLTQLARAGLIDPVIGREKEIERVIEILNRRNKNNPVLIGEPGVGK
TAIVEGLALKIAEGSVPTKLLNKEVYVLDVASLVANTGIRGQFEERMKQLIAELQQRKNVILFIDEIHLLVGAGSAEGSM
DASNILKPTLARGELQIIGATTLKEYRQIEKDAALERRFQPVIVHEPTIEQAINMLKGIQPKYEQFHQVKYTDEAIHACV
TLSHRYIQDRFLPDKAIDLLDEAGSKVSLKATPTNKEAIEQRLEQIKKEKEKAAQEENYELAAKLRTEELQLEKQLQQNG
QAEQPIVDVAHIQQIIEEKTGIPVGKLQAEEQTKMKHLEENLAKKVIGQEEAVRKIAKAIRRSRAGLKAKNRPIGSFLFV
GPTGVGKTELSKTLAEQLFGSTDAMIRLDMSEYMEKHAVSKLIGAPPGYVGHEEAGQLTEKVRRNPYSIILLDEMEKAHP
DVQHMFLQILEDGRLTDSQGRTVSFKDTVIIMTSNAGTIGEGDLLQRLSLYFKPEFLNRLDAIVEFKPLEKAHMLQIVDL
MLAELQRTLDEQHITMTISDKAKEKLAELGYHPTFGARPLRRVMQEHVEDQIADVLLDEHDVRTIHIDVEDDRIVVKAEK
A

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
clpC YP_005163377.1 ATP-dependent Clp protease ATP-binding subunit Not tested Not named Protein 7e-146 51

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
clpE YP_002316328.1 ATP-dependent Clp protease-like protein VFG0080 Protein 0.0 61
clpE YP_002316328.1 ATP-dependent Clp protease-like protein VFG0079 Protein 6e-147 53