Gene Information

Name : swp_5090 (swp_5090)
Accession : YP_002314292.1
Strain : Shewanella piezotolerans WP3
Genome accession: NC_011566
Putative virulence/resistance : Virulence
Product : Helix-turn-helix, Fis-type
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 5314648 - 5315955 bp
Length : 1308 bp
Strand : +
Note : -

DNA sequence : 
ATGAACCGTTCGAGTTTAAGATTTGTAGACTCTAGTTTGCCTGAAGCAAGCCTAGCGAAACTGACACTACAAGGCTTTAA
CCTTTGGCAAGATCCTGACAGCTCTCGCCCTTGGCTAAGTTTGGTCAACCTTTCAGAGTGTGACAATACAGAAGTGGATC
GACGCTTGCGTCAGTTTCCAGGCAAGCATCAAGTAGCACTGCTGAACCCCGAACAAACGGAGCTGGCTAGCATTGCCATG
CAGTCAGGAATTCAAGATTACTTATTGTTACCCATTGATGACGAGCAACTCAGTTCGCTGTTGCATCGATTACGCCGCAT
AGAGCTACCCGAAAACGATCTCGTCAGCGCTGCTCGCGAAAGTCGACAACTGCTGATGCTTGCTCATCGTGCCGCCATGA
CAGAAGCAACCGTCTTATTAACCGGAGAAAGTGGCACAGGCAAAGAACCTATTGCTCGGTACATTCATCGCCATTCAAAT
AGAGCCAAGCAACCTTTTGTCGCAATCAACTGCGCCGCGATACCGGAAAGCATTTTAGAGTCCTTGCTATTTGGTCATGT
CAAAGGTGCTTTTACTGGCGCGATGAACGAACAGCCAGGTAAATTTGAAATGGCCAATGGTGGCACCTTGCTGCTTGATG
AAATAGGTGAAATGCCACTTTTACTACAAGCCAAGTTATTGCGCGTTTTACAGGAAAGAGAGGTCGAGCGCTTAGGAGGG
CACAAATCAATTCCTTTAAACATTCGGGTAATTGCGGCTACCAATAAAGACCTTCGCAGTGCAGTTCAAAATGGTCAATT
CAGAGAAGACCTTTTCTACCGTTTAGATGTATTGCCGCTAAAAATTCTACCTTTACGCCAACGCCGAGAAGACATTCTGC
CGTTGGCGGAGCACTTTTTACAGAAGTACAAAATGCTGGCCGGTGAACAGAGCTGTTACTTCAGTGATCAGGCTAAAAAT
TTACTGTTGAGCCACAATTGGCCAGGAAATGTGCGCGAGCTAGAAAACACCATCCAAAGAGCATTAGTAATGCGTCGTGG
ACAGGCTCTGCAAGCTGCAGAACTCGGCCTTGTCGACCAAGATGCTCAACCTTATAGCGAACAAAGCGAGCTGGGCTTAA
AGGCATCTAAGCGTCGAGCTGAATTTCAATACATCATCGACACTTTAAAACAGCACAACGGTCATCGCAATCAAACCGCC
TCAGCTCTAGGAATGACTACGCGAGCCTTACGCTACAAGCTAGTTCAGATGCGTGAAGAAGGTATTGATATCGACCAGAT
CCTTGCAGAAATTGGTCACGCTGCTTAA

Protein sequence : 
MNRSSLRFVDSSLPEASLAKLTLQGFNLWQDPDSSRPWLSLVNLSECDNTEVDRRLRQFPGKHQVALLNPEQTELASIAM
QSGIQDYLLLPIDDEQLSSLLHRLRRIELPENDLVSAARESRQLLMLAHRAAMTEATVLLTGESGTGKEPIARYIHRHSN
RAKQPFVAINCAAIPESILESLLFGHVKGAFTGAMNEQPGKFEMANGGTLLLDEIGEMPLLLQAKLLRVLQEREVERLGG
HKSIPLNIRVIAATNKDLRSAVQNGQFREDLFYRLDVLPLKILPLRQRREDILPLAEHFLQKYKMLAGEQSCYFSDQAKN
LLLSHNWPGNVRELENTIQRALVMRRGQALQAAELGLVDQDAQPYSEQSELGLKASKRRAEFQYIIDTLKQHNGHRNQTA
SALGMTTRALRYKLVQMREEGIDIDQILAEIGHAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrpR AAC34752.1 HrpR Virulence Hrp PAI Protein 5e-40 43
hrpR AAC35799.1 transcriptional regulator Virulence Hrp PAI Protein 8e-38 42
hrpR AAT96162.1 HrpR Virulence T-PAI Protein 4e-41 42
hrpR AAT96216.1 HrpR Virulence T-PAI Protein 4e-41 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
swp_5090 YP_002314292.1 Helix-turn-helix, Fis-type BAC0467 Protein 5e-55 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
swp_5090 YP_002314292.1 Helix-turn-helix, Fis-type VFG1249 Protein 2e-76 50