Gene Information

Name : swp_4998 (swp_4998)
Accession : YP_002314200.1
Strain : Shewanella piezotolerans WP3
Genome accession: NC_011566
Putative virulence/resistance : Virulence
Product : Response regulator receiver:Transcriptional regulatory protein
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 5220667 - 5221344 bp
Length : 678 bp
Strand : -
Note : Response regulator receiver:Transcriptional regulatory protein, C-terminal

DNA sequence : 
ATGAAAATACTCATGGTCGAAGACGACGCGACGACAGTTGAATATGTTGTAAAAGGATTTATAGAGCAGGGGCATAACAT
TGAAACCGCTACCGATGGTCATCAAGGATTGTTGCTAGCAACCAGCATGAAGTATGACTTAATCATATTAGACCGAATGT
TACCTCAGCTCGATGGCCTTAAGTTATTAGCAGCGCTACGTGCAACTGGCAGCCAAACACCTGTTCTTATCTTATCGGCA
TTAAGCCATGTTGATGAGCGTGTTAAAGGCCTGCGTGCTGGTGGTGATGATTACATGACTAAGCCATTTGCGTTTTCAGA
GCTGTTAGTGCGGGCAGAAAAATTGATGCAGCGCGGCGAATCTCAGCCAATGGTGACAGATTTAAGTGTTGGTCCACTGT
CGATTGAATTGTTAACCCGTAAGGTGACCCTTGATGGGCAAGAGATCTTACTGCAACCGAAAGAGTTTCAGTTACTGAAA
TACCTGATGGAACATGAGAATCAAGTGATTAGCCGCACCTTGTTATTTGAAGCTGTGTGGGATTACCACTTTGACCCGCG
TACTAACGTAATTGATGTGCATATTGCTAAGCTTAGACGTAAATTTGAAGAACTAGGCCACGGTGAGCTGATTGAAACTG
TCCGAGGGGCAGGTTATCGCTTACGCCAAGGGCATTAA

Protein sequence : 
MKILMVEDDATTVEYVVKGFIEQGHNIETATDGHQGLLLATSMKYDLIILDRMLPQLDGLKLLAALRATGSQTPVLILSA
LSHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMQRGESQPMVTDLSVGPLSIELLTRKVTLDGQEILLQPKEFQLLK
YLMEHENQVISRTLLFEAVWDYHFDPRTNVIDVHIAKLRRKFEELGHGELIETVRGAGYRLRQGH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 2e-40 44
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 7e-40 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
swp_4998 YP_002314200.1 Response regulator receiver:Transcriptional regulatory protein BAC0347 Protein 2e-45 45
swp_4998 YP_002314200.1 Response regulator receiver:Transcriptional regulatory protein BAC0083 Protein 3e-42 45
swp_4998 YP_002314200.1 Response regulator receiver:Transcriptional regulatory protein BAC0111 Protein 7e-47 45
swp_4998 YP_002314200.1 Response regulator receiver:Transcriptional regulatory protein BAC0197 Protein 4e-40 45
swp_4998 YP_002314200.1 Response regulator receiver:Transcriptional regulatory protein BAC0125 Protein 3e-40 43
swp_4998 YP_002314200.1 Response regulator receiver:Transcriptional regulatory protein BAC0638 Protein 1e-38 43
swp_4998 YP_002314200.1 Response regulator receiver:Transcriptional regulatory protein BAC0308 Protein 7e-42 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
swp_4998 YP_002314200.1 Response regulator receiver:Transcriptional regulatory protein VFG0596 Protein 9e-41 44
swp_4998 YP_002314200.1 Response regulator receiver:Transcriptional regulatory protein VFG1389 Protein 2e-37 44