Gene Information

Name : swp_4978 (swp_4978)
Accession : YP_002314180.1
Strain : Shewanella piezotolerans WP3
Genome accession: NC_011566
Putative virulence/resistance : Virulence
Product : Sigma-54 dependent response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 5203072 - 5204433 bp
Length : 1362 bp
Strand : -
Note : -

DNA sequence : 
ATGAAGCCAATTCCTTCCGCTGTATCAGTACTAATTGTCGACGATGAACCTGGTATGCGCAGCTTTTTGAAAAAGGCGCT
GGCAAAGAAGTTTGCGTTGGTGGAAATCGCTTCCAGTGTTGAGGATGCAGAACAGTTACGCTCACGCTGTCACTTTGACC
TGCTTATTGTGGATATTCGCTTACCTGGGCGTTCGGGCATTGAATGGCACGAAGCACTCAATGATCAAGAGCGACGATCT
GACATCATCTTTATGACAGGTTATGCCGATATGGATGTGGCAATAAAAGCTCTGCGCGCAGGGGCATCCGATTTTATTAT
GAAGCCGTTCCATCTAGAGCAGATGATGAAAGCCGTTGATCGCTGCATTGAGCGTCGCTTGCTAAAGCGAGAAAACTTAA
TGCTTCGCCGCGAAGTTTCTTTTAATCAATCCTCTACCATTATTGGCCAGAGCGATGCGATGACCGAAGTGAAAGATGTG
ATTGCTCGCGTGGCGCCAACCAATGCCGTGGTATTGATTGAAGGTGAGTCAGGCACTGGTAAAGAACTGGTCGCCAGACA
GCTGCATACATTAAGCGGTCGCCAAGGGCCATTTGTGGCAGTTAACTGTGGTGCCATCGCCCCAGAGTTACTAGAAAGTG
AGTTATTTGGTCACTCCGCCGGTTCCTTTACCGGCGCAAAAGGTAATCGCGAAGGTTTGTTTAGTTTTGCTTCGGGTGGC
ACTATTTTCCTCGATGAGATTGGTGAAATGCCGCTAAAAATGCAGACGGCGTTACTGCGAGTGTTAGAGCAAAGAACCAT
TAGACCTGTGGGCAGTGAGAAAGAGATTAATATTGATGTCCGGGTGCTGGCAGCGACTAACCGCAAGTTATCTGAGGAGG
TTGAAGAAGGCAACTTTAGGCGTGATCTATACTACCGCCTCAACGTGCTTGATATTGTGATCCCCCCACTGCGTGATAGA
CCTGAAGATATCGTAGAGCTGACTCATCACTTTACCTGTCAGCTAGCCTCAGAGCTTGGCGTTAAAGAGGTGGTATGGAG
CCATGAGGATATGCTTAAACTGCAGCAGCATGAGTGGCCAGGTAATATCCGTGAGCTGCGAAATATGATTGAACGCTGTA
TATTGCTCGGCAAGCCACCGGCAGAGTACTGGAAAGCGCAGCCTAAAGCAGAGATGGTGGCTGAATCTGGTTACCCGCTG
CAGTGGGCGTTAAAAGATGTTGAACGCGACCATGTGACTCGAGTTGTCGATATACATGGCGGTAATAAATCTGCTGCAGC
AAGAGATCTTGGTGTATCGCGTAAAACGCTAGACCGCAAGTATAAAGAGTGGTTTGGCGGTGAAAAGAATATTGAAGAAT
AA

Protein sequence : 
MKPIPSAVSVLIVDDEPGMRSFLKKALAKKFALVEIASSVEDAEQLRSRCHFDLLIVDIRLPGRSGIEWHEALNDQERRS
DIIFMTGYADMDVAIKALRAGASDFIMKPFHLEQMMKAVDRCIERRLLKRENLMLRREVSFNQSSTIIGQSDAMTEVKDV
IARVAPTNAVVLIEGESGTGKELVARQLHTLSGRQGPFVAVNCGAIAPELLESELFGHSAGSFTGAKGNREGLFSFASGG
TIFLDEIGEMPLKMQTALLRVLEQRTIRPVGSEKEINIDVRVLAATNRKLSEEVEEGNFRRDLYYRLNVLDIVIPPLRDR
PEDIVELTHHFTCQLASELGVKEVVWSHEDMLKLQQHEWPGNIRELRNMIERCILLGKPPAEYWKAQPKAEMVAESGYPL
QWALKDVERDHVTRVVDIHGGNKSAAARDLGVSRKTLDRKYKEWFGGEKNIEE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 2e-64 43
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 2e-64 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
swp_4978 YP_002314180.1 Sigma-54 dependent response regulator BAC0467 Protein 9e-67 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
swp_4978 YP_002314180.1 Sigma-54 dependent response regulator VFG1214 Protein 9e-67 43