Gene Information

Name : swp_4732 (swp_4732)
Accession : YP_002313952.1
Strain : Shewanella piezotolerans WP3
Genome accession: NC_011566
Putative virulence/resistance : Virulence
Product : Response regulator receiver:Transcriptional regulatory protein
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 4955227 - 4955964 bp
Length : 738 bp
Strand : +
Note : Response regulator receiver:Transcriptional regulatory protein, C-terminal

DNA sequence : 
ATGAACGGATCAACGACCAATTTTTCAGCTGTTTCAAGCAAGACCATATTATTGATTGAAGATGAGCAAGACTTAGCCAA
GCTAGTCATGCTTAACCTGAAAAGCATGAACCATGCAGTTATTCACTGTGTAACGTTACAGCAGGCTAGCCAAGTGATTG
CCACCAAGCAGATAGATCTTATCCTGATGGATAGAATGCTACCTGATGGGGATGGAATCACTCTTTGTCAACAGATCCGC
CAAGACGGTAATGAGCTACCTTGCATGTTGTTGACTGCGAAGGATTCGGAAGCTGATATTGTCTTAGGGCTTGAATCTGG
TGCAGATGATTATCTGGTTAAACCCTTTAGCGTGTTAGAGCTAAGAGCTAGGGTAAAAGCATTATTAAGGCGTGGAACAC
AAATAGCCCATCAAGATGAGTCGTTGGAGTTCAACGGTATTAGCATTAACTGTAATACCCGTGAGGTTATTGCTTTTAAT
GAAACATTAGAACTCACAGCCAGAGAGTTTGATCTTCTGCTCTATTTGGCTCAGCACCCAAAGCAGGTATTCAGCCGTAT
GCAGCTTTTGGAAGCAGTGTGGGGTTACTCCTATTCAGGCTACGAACATACCGTAAATAGCCACATCAACCGCCTGCGTA
ATAAGTTGGCGAGAAATGCTTGCACCACAGACTTAGTCAAAACAGTTTGGGGGGTCGGTTATAAATTTGCCCCACCAGCG
AACCAAGCTGCATCTTGA

Protein sequence : 
MNGSTTNFSAVSSKTILLIEDEQDLAKLVMLNLKSMNHAVIHCVTLQQASQVIATKQIDLILMDRMLPDGDGITLCQQIR
QDGNELPCMLLTAKDSEADIVLGLESGADDYLVKPFSVLELRARVKALLRRGTQIAHQDESLEFNGISINCNTREVIAFN
ETLELTAREFDLLLYLAQHPKQVFSRMQLLEAVWGYSYSGYEHTVNSHINRLRNKLARNACTTDLVKTVWGVGYKFAPPA
NQAAS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 3e-45 46
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 2e-44 45

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
swp_4732 YP_002313952.1 Response regulator receiver:Transcriptional regulatory protein CP001918.1.gene5135. Protein 4e-23 43
swp_4732 YP_002313952.1 Response regulator receiver:Transcriptional regulatory protein NC_007622.3794472.p0 Protein 4e-44 42
swp_4732 YP_002313952.1 Response regulator receiver:Transcriptional regulatory protein NC_002745.1124361.p0 Protein 3e-44 42
swp_4732 YP_002313952.1 Response regulator receiver:Transcriptional regulatory protein NC_009782.5559369.p0 Protein 3e-44 42
swp_4732 YP_002313952.1 Response regulator receiver:Transcriptional regulatory protein NC_002951.3237708.p0 Protein 3e-44 42
swp_4732 YP_002313952.1 Response regulator receiver:Transcriptional regulatory protein NC_003923.1003749.p0 Protein 3e-44 42
swp_4732 YP_002313952.1 Response regulator receiver:Transcriptional regulatory protein NC_002758.1121668.p0 Protein 3e-44 42
swp_4732 YP_002313952.1 Response regulator receiver:Transcriptional regulatory protein NC_009641.5332272.p0 Protein 3e-44 42
swp_4732 YP_002313952.1 Response regulator receiver:Transcriptional regulatory protein NC_013450.8614421.p0 Protein 3e-44 42
swp_4732 YP_002313952.1 Response regulator receiver:Transcriptional regulatory protein NC_007793.3914279.p0 Protein 3e-44 42
swp_4732 YP_002313952.1 Response regulator receiver:Transcriptional regulatory protein FJ349556.1.orf0.gene Protein 1e-41 42
swp_4732 YP_002313952.1 Response regulator receiver:Transcriptional regulatory protein NC_002952.2859905.p0 Protein 1e-43 41
swp_4732 YP_002313952.1 Response regulator receiver:Transcriptional regulatory protein NC_014475.1.orf0.gen Protein 3e-34 41
swp_4732 YP_002313952.1 Response regulator receiver:Transcriptional regulatory protein NC_005054.2598277.p0 Protein 3e-34 41
swp_4732 YP_002313952.1 Response regulator receiver:Transcriptional regulatory protein AF162694.1.orf4.gene Protein 1e-31 41
swp_4732 YP_002313952.1 Response regulator receiver:Transcriptional regulatory protein AE000516.2.gene3505. Protein 6e-34 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
swp_4732 YP_002313952.1 Response regulator receiver:Transcriptional regulatory protein VFG1563 Protein 2e-45 46
swp_4732 YP_002313952.1 Response regulator receiver:Transcriptional regulatory protein VFG1702 Protein 7e-45 45
swp_4732 YP_002313952.1 Response regulator receiver:Transcriptional regulatory protein VFG1389 Protein 4e-28 42