Gene Information

Name : swp_3996 (swp_3996)
Accession : YP_002313253.1
Strain : Shewanella piezotolerans WP3
Genome accession: NC_011566
Putative virulence/resistance : Resistance
Product : Probable chloramphenicol acetyltransferase
Function : -
COG functional category : R : General function prediction only
COG ID : COG0110
EC number : 2.3.1.28
Position : 4210246 - 4210875 bp
Length : 630 bp
Strand : +
Note : -

DNA sequence : 
TTGAACAATTATTTCGAAAGCCCTTTTGAGGGTAAGTCGCTCCAAGAGCAAGTCACCAACCCAAACATTGTTGTTGGTAA
GCACAGTTATTACTCTGGCTATTACCATAATCACAGTTTCGATGATTGTGCACGTTACCTAATGGCGGATAGAACAGACA
TTGATAAGCTCATGATTGGTAGCTACTGCTCGATTGGATCTGGCGCGGTCTTTATGATGGCGGGAAATCAAGGTCATCAA
AACAATTGGATCAGTACCTTTCCTTTCTTTTATCAAGACAATGACAACTTTATCGGAGCCAAAGATGGGTTTGAGCGTGC
TGGCGATACCATCATAGGCAATGATGTATGGATTGGCAGCGAAGCCATGATAATGAGTGGTGTGACTGTGGGTGATGGCG
CGATTATAGCTAGCCGCGCGGTAGTGACCAAAGATGTTGCGCCCTACGAAATTGTAGGTTCAAACCCTGCAAAACATATT
CGTTTCCGTTTTTCAGAAACCGAAATATCTCAATTGCTCGAGATGCAATGGTGGCTTTGGAGCGATGAAGAGCTCAAAGG
TGCGATGGCCTTAATGTGCTCATTGAATATAGGTGGCCTATACAGTTACTGGCAAGATTTTAATCTTTAA

Protein sequence : 
MNNYFESPFEGKSLQEQVTNPNIVVGKHSYYSGYYHNHSFDDCARYLMADRTDIDKLMIGSYCSIGSGAVFMMAGNQGHQ
NNWISTFPFFYQDNDNFIGAKDGFERAGDTIIGNDVWIGSEAMIMSGVTVGDGAIIASRAVVTKDVAPYEIVGSNPAKHI
RFRFSETEISQLLEMQWWLWSDEELKGAMALMCSLNIGGLYSYWQDFNL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
catB8 YP_005797132.1 chloramphenicol acetyltransferase Not tested AbaR4e Protein 2e-62 66
catB3 AET25385.1 chloramphenicol acetyltransferase Not tested PAGI-2(C) Protein 6e-62 66
catB3 AFG30108.1 chloramphenicol acetyltransferase Not tested PAGI-2 Protein 6e-62 66

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
swp_3996 YP_002313253.1 Probable chloramphenicol acetyltransferase AF322577.2.gene4.p01 Protein 3e-62 66
swp_3996 YP_002313253.1 Probable chloramphenicol acetyltransferase AY123251.gene2.p01 Protein 7e-63 66
swp_3996 YP_002313253.1 Probable chloramphenicol acetyltransferase AY740681.1.gene5.p01 Protein 3e-62 66
swp_3996 YP_002313253.1 Probable chloramphenicol acetyltransferase JF268688.1.gene6.p01 Protein 1e-57 66
swp_3996 YP_002313253.1 Probable chloramphenicol acetyltransferase NC_002516.2.878374.p Protein 1e-59 65
swp_3996 YP_002313253.1 Probable chloramphenicol acetyltransferase AM180355.1.gene2499. Protein 3e-28 48
swp_3996 YP_002313253.1 Probable chloramphenicol acetyltransferase CP001581.1.gene990.p Protein 3e-37 45