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Name : swp_3938 (swp_3938) Accession : YP_002313197.1 Strain : Shewanella piezotolerans WP3 Genome accession: NC_011566 Putative virulence/resistance : Virulence Product : AAA ATPase, central region:Clp, N terminal Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : 3.4.21.92 Position : 4153314 - 4155887 bp Length : 2574 bp Strand : - Note : - DNA sequence : ATGCGATTAGATCGTATGACCAATAAATTCCAAATTGCTATCTCGGACGCTCAATCATTGGCATTGGGTCGAGATCACCA ATTTATCGAGCCCGTACATTTGATGATGGCATTGCTTAATCAAGATGGCGGTTCTATTCACCCATTATTGACCCAAGCTG GAATTCAAGTCAGTAGCTTGCGTTCTTTATTAAGTAAAGAGTTGGAGCAATTGCCTCAGGTTGAAGGCACTGGCGGAGAT GTTCAGCTATCTCAAGCATTGATACGTCTTCTTAATGTGTGCGATAAGCTAGCGCAAAAGCGTAAAGACAAGTTTATCTC TAGTGAACTATTTGTTCTCGCCGCGCTGGATGGCAATGATGTATTGGCCAAAGCTTTGAAAAAGTCGGGGGCAGATAAAG CCCTATTGGAAAACACAATTGATCAGATCCGTAATGGTCAGAATGTTGATGATCCCAATGCTGAAGATCAACGCCAAGCA TTGAAAAAGTTTACCGTCGACCTGACAGAACGTGCCGAGCAGGGAAAGCTAGACCCTGTGATTGGTCGGGATGATGAAAT TCGCCGTACTATCCAAGTGCTGCAGCGTCGTAGCAAGAATAACCCGGTACTCATCGGTGAACCAGGAGTGGGTAAAACCG CTATTGTCGAGGGGCTAGCACAACGCATTATTAATAATGAAGTACCTGAAGGAATTAAAAACAAGCGAGTCTTGTCCTTG GATATGGGCGCATTAGTTGCAGGTGCTAAATACCGTGGTGAGTTTGAAGAGCGTTTAAAAGCTGTACTAAATGAACTATC TCAGGAAGAGGGCCAAGTTATCCTCTTTATTGATGAGCTGCACACAATGGTTGGTGCCGGAAAAGGCGATGGTGCCATGG ATGCAGGGAATATGCTTAAGCCTGCCTTGGCTCGGGGTGACTTACATTGTGTTGGTGCGACGACGTTAGATGAGTATCGT CAGTATATTGAAAAGGATGCTGCGCTTGAGCGTCGTTTCCAAAAGGTGCTGGTGGATGAGCCCAATGTTGAAGATACCAT TGCTATTTTACGTGGACTAAAAGAGCGTTATGAGCTGCATCATCATGTGGAGATCACTGACCCCGCTATTGTCGCAGCTG CGAGCATGTCTAACCGCTATATATCAGATCGTAAGCTACCTGATAAAGCCATTGATTTGATCGATGAGGCCGCTTCAAGT ATTAGAATACAGATAGACTCTAAGCCTGAATCTCTCGATAAACTTGAACGCCGTGCAATTCAGTTAAAACTTGAAGAACA AGCTGTAAGCAAAGAGGAAGATGAAGCAAGCCTGCGTCGTTTGGATGTGTTGCGCTCTGAACTTAAAGAGGTTGAAGGTA AAGCAGGCGAGCTTAATGAGATTTGGCATACTGAAAAAGCAGCACTTGCAGGTACTCAGCATATCAAGGCAGATCTTGAA CAAGCGAGAATGGATCTTGAGGTTGCAAGGCGAGCAGGTGATTTAACACGTATGTCTGAACTTCAATATGGTCGCATTCC TGAACTTGAAAAGCAGCTAGATTTAGCGGCGCAAGCTGAAATGCAAGATATGACTTTGCTTCGCAACAAGGTCACCGATA TTGAAATTGCAGAAGTGTTGTCCAAAGCGACTGGGATCCCTGTATCTAAAATGCTAGAGGGTGAGCGTGAAAAGTTACTG CAGATGGAAGATGCATTGCATGAGCGTGTCATTGGACAAAACGAAGCCGTCGATTCGGTATCGAATGCAATTCGTCGTAG CCGAGCTGGGCTTGCAGATCCTAACCGTCCTATTGGTTCTTTCCTATTTTTGGGGCCCACAGGCGTAGGTAAAACAGAGC TGTGTAAGTCGCTAGCAAAATTCCTGTTTGATACAGAATCTGCGCTAGTTCGAATTGATATGTCTGAGTTTATGGAAAAG CATTCTGTTTCGCGTTTAGTTGGCGCACCACCAGGTTACGTTGGCTATGAAGAAGGTGGATATCTAACTGAAGCGGTAAG ACGTAAGCCTTATTCGGTGATTTTGCTTGATGAAGTGGAGAAAGCGCATCCAGATGTGTTCAATATCTTACTACAGGTAC TCGATGACGGCCGCTTGACCGATGGCCAAGGCCGCACTGTAGATTTTCGTAATACCGTTGTGATTATGACATCAAACCTT GGTTCTGATGCGATTCAAGCAGGTTTTGGTTCTCAAAACTACGATGAAATGAAATCTAACGTTATGCAGGTGGTCACACA ACATTTTAGACCAGAGTTTTTGAACCGAGTCGATGAGTCTGTTGTTTTCCATCCATTGAATAAGGAAAATATTGCTCATA TTGCATCAATTCAAATTGACGGACTCAAGCAAAGGCTAGCAGACAAAGACTACGAGTTAAGCATAAGTGATGACGCCTTA GCGATTATTGCAGAGGCTGGTTATGATCCCATATATGGTGCTAGACCACTCAAGCGGGCATTGCAGCAGGAAGTTGAAAA CCCACTGGCACAAAAAATCTTAAGTGGTCAGTTGCAACCAGGTAAAGCTATTAATATATCTGTTTCAGAAAACGAACTGA CTTTCACTCAGTAA Protein sequence : MRLDRMTNKFQIAISDAQSLALGRDHQFIEPVHLMMALLNQDGGSIHPLLTQAGIQVSSLRSLLSKELEQLPQVEGTGGD VQLSQALIRLLNVCDKLAQKRKDKFISSELFVLAALDGNDVLAKALKKSGADKALLENTIDQIRNGQNVDDPNAEDQRQA LKKFTVDLTERAEQGKLDPVIGRDDEIRRTIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINNEVPEGIKNKRVLSL DMGALVAGAKYRGEFEERLKAVLNELSQEEGQVILFIDELHTMVGAGKGDGAMDAGNMLKPALARGDLHCVGATTLDEYR QYIEKDAALERRFQKVLVDEPNVEDTIAILRGLKERYELHHHVEITDPAIVAAASMSNRYISDRKLPDKAIDLIDEAASS IRIQIDSKPESLDKLERRAIQLKLEEQAVSKEEDEASLRRLDVLRSELKEVEGKAGELNEIWHTEKAALAGTQHIKADLE QARMDLEVARRAGDLTRMSELQYGRIPELEKQLDLAAQAEMQDMTLLRNKVTDIEIAEVLSKATGIPVSKMLEGEREKLL QMEDALHERVIGQNEAVDSVSNAIRRSRAGLADPNRPIGSFLFLGPTGVGKTELCKSLAKFLFDTESALVRIDMSEFMEK HSVSRLVGAPPGYVGYEEGGYLTEAVRRKPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNL GSDAIQAGFGSQNYDEMKSNVMQVVTQHFRPEFLNRVDESVVFHPLNKENIAHIASIQIDGLKQRLADKDYELSISDDAL AIIAEAGYDPIYGARPLKRALQQEVENPLAQKILSGQLQPGKAINISVSENELTFTQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 1e-155 | 45 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| swp_3938 | YP_002313197.1 | AAA ATPase, central region:Clp, N terminal | VFG0079 | Protein | 7e-129 | 41 |
