Gene Information

Name : swp_3810 (swp_3810)
Accession : YP_002313076.1
Strain : Shewanella piezotolerans WP3
Genome accession: NC_011566
Putative virulence/resistance : Virulence
Product : Betaine aldehyde dehydrogenase
Function : -
COG functional category : C : Energy production and conversion
COG ID : COG1012
EC number : 1.2.1.8
Position : 4026817 - 4028280 bp
Length : 1464 bp
Strand : +
Note : -

DNA sequence : 
ATGTCACTAGTTGTATATCCAAACTATATCCACGGACAAGCCCTTAGAAACAGTAGCGGCGAAACCTTTGAAGTGATTAA
CCCAGCGACTGGCAAGGTCAATTATTTAGTTGAAGTTGCCGATGAAAAGATCCAGCAAGCGGCAATCGACAGTGCAAAAA
CAGGCTTTGCCGTTTGGTCTGCAATGAGCACATTCGAGCGCAGTCGTATTTTGCTTAAAGCCGTTGCACTGCTTCGCGAG
CGCAACGACGAGCTAGCAGCAATAGAAGTGCAAGACACAGGTAAACCCTGGCAAGAAGCGTCAGTGGTTGACGTGGTAAC
CGGTGCAGATTCAATTGAGTTCTTTGCCGGTCTTGCGCCAAGTATTGAGGGCAATCAGCAAACCGTTGGTGATGATTTCT
ATTACACCCGCCGCGAGCCATTAGGTATTTGTGCCGGGATTGGCGCTTGGAACTATCCGCTACAGATCGCCTGCTGGAAA
TCAGCGCCGGCGCTGGCTTGCGGCAATGTGATGATCTTTAAACCATCGGAAGAAACGCCCTTAGGTGCATTAAAGCTTGC
AGAGATATTTACCGAAGCGGGCGTACCCGATGGTGTATTTAACGTAGTGCAAGGTGATGGCCGCGTGGGCGCTTGGCTAA
CGCATAATGAAGAGATAGCAAAAGTGTCGTTCACCGGTGAAGTCGGCACAGGCAAAAAAGTAATGGCAGCTGCTGCCAGC
TCACTCAAAGAGGTCACTATGGAGCTTGGCGGTAAATCACCGCTAATCGTCTTCAACGACGCTGATCTCGACAACGCAGT
ATCGGCTGCCATGCTAGGTAACTTCTACACCCAGGGCGAAATTTGCACCAATGGCACACGGGTATTTGTGCAGCAGGATA
TCTACCCTCAGTTTATTGAAAAACTCCTTAAACGCACTCAAGAGAATATTGTCTGTGGCGATCCGATGGATCCGGCAACA
AACTTTGGCGCGCTTATCTCAAAGCCGCATCTCGACAAGGTGATGAGTTACATTGAGATTGGCAAGCAAGAAGGCGCAGA
GCTACTCGCAGGCGGCCACACTTTAAGCCCTGATAACAGCCCTAGTGGCTACTTTGTTGCGCCGACTATTTTTGGTCAGT
GCAGCGATGAAATGACCTTAAGCCAAGAGGAGATCTTCGGTCCGGTGATGTCGGTACTGCCGTTTAGTGATGAAGATGAA
GTTATTCGCCGCGCGAATGCCACCCGCTTAGGCTTGGCCGCAGGCGTGTTTACTCAAGACATTACCCGCGCGCACCGCGT
TATCCATCAGATGCAAGCAGGTATTTGCTGGATAAATGCCTATGGTGCCTCACCGGCAGAGATGCCTGTAGGCGGCTATA
AAATGTCGGGGATTGGCCGTGAAAACGGCAGTGAAACCCTAAAAGCTTACACTCAAATCAAAGCCGTATACGTTGGTATG
CAGCCGCTTGAAAGTCCGTTTTAA

Protein sequence : 
MSLVVYPNYIHGQALRNSSGETFEVINPATGKVNYLVEVADEKIQQAAIDSAKTGFAVWSAMSTFERSRILLKAVALLRE
RNDELAAIEVQDTGKPWQEASVVDVVTGADSIEFFAGLAPSIEGNQQTVGDDFYYTRREPLGICAGIGAWNYPLQIACWK
SAPALACGNVMIFKPSEETPLGALKLAEIFTEAGVPDGVFNVVQGDGRVGAWLTHNEEIAKVSFTGEVGTGKKVMAAAAS
SLKEVTMELGGKSPLIVFNDADLDNAVSAAMLGNFYTQGEICTNGTRVFVQQDIYPQFIEKLLKRTQENIVCGDPMDPAT
NFGALISKPHLDKVMSYIEIGKQEGAELLAGGHTLSPDNSPSGYFVAPTIFGQCSDEMTLSQEEIFGPVMSVLPFSDEDE
VIRRANATRLGLAAGVFTQDITRAHRVIHQMQAGICWINAYGASPAEMPVGGYKMSGIGRENGSETLKAYTQIKAVYVGM
QPLESPF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC0819 NP_230467.2 aldehyde dehydrogenase Not tested VPI-1 Protein 1e-72 41
aldA AAC12273.1 aldehyde dehydrogenase Virulence VPI Protein 3e-75 41
aldA AAK20747.1 aldehyde dehydrogenase Virulence VPI Protein 3e-75 41
aldA AAK20776.1 aldehyde dehydrogenase Virulence VPI Protein 3e-75 41
aldA-1 YP_001216300.1 aldehyde dehydrogenase Not tested VPI-1 Protein 1e-74 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
swp_3810 YP_002313076.1 Betaine aldehyde dehydrogenase VFG0082 Protein 5e-73 41