Gene Information

Name : swp_3330 (swp_3330)
Accession : YP_002312619.1
Strain : Shewanella piezotolerans WP3
Genome accession: NC_011566
Putative virulence/resistance : Virulence
Product : ABC transporter, ATP-binding protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 3512059 - 3512775 bp
Length : 717 bp
Strand : -
Note : -

DNA sequence : 
ATGGATAAGAAACATATGGTAAAACTAGAAGGGATCTGTAAATCGTTTTTAACTGATGAGGTCGAAACACTTGCCTTAAG
CCATATTGACTTGACGATAAAGAAGGGCGAGTTCCTTGCTATCACAGGCCCTTCTGGCTGCGGTAAATCAACGTTATTAT
CACTTATCGGCCTGCTAGATACTTCATCAAAAGGTCGTTATCAGCTCGCTGGACATGATGTTTCTGACTTAACTCGAGAT
CAGCGAGCGCTGATTAGGAATAAGGAAATCGGATTTGTTTTTCAATCATTTAATTTGATAAGTGATCTGACAGTCGCTGA
AAATGTACAGTTGCCTTTAAGTTATCGAGGCGATCTAAATCAGCTTCAGATAGATGCTAAGGTCAGAGAAGCTTTAGAAA
AGGTGGATATGCTTCATCGGGCTAAACATTTTCCTTCGCAACTCTCTGGTGGGCAGCAGCAACGTGTGGCTGTTGCTCGT
GCAATAGCGGGAGAACCAGCGGTTATTCTGGCCGATGAACCGACCGGGAATCTAGATTCCAAGAATGCGAAAGCAGTTAT
GGCTATATTGGATCAATTACATGATGAAGGAGCGACAATCTGTATGGTGACTCATGACCCACGTTCCGCCGAAAGAGCTC
AGCGCATTATTGAAGTTTACGATGGCAAAATTGTCTCAGATCAGCAGACTATGCCGCTTTCTGCAATCGCTATATAA

Protein sequence : 
MDKKHMVKLEGICKSFLTDEVETLALSHIDLTIKKGEFLAITGPSGCGKSTLLSLIGLLDTSSKGRYQLAGHDVSDLTRD
QRALIRNKEIGFVFQSFNLISDLTVAENVQLPLSYRGDLNQLQIDAKVREALEKVDMLHRAKHFPSQLSGGQQQRVAVAR
AIAGEPAVILADEPTGNLDSKNAKAVMAILDQLHDEGATICMVTHDPRSAERAQRIIEVYDGKIVSDQQTMPLSAIAI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-22 41
Spaf_1862 YP_006310627.1 amino acid ABC transporter ATP-binding protein Not tested FWisland_2 Protein 2e-22 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
swp_3330 YP_002312619.1 ABC transporter, ATP-binding protein NC_012469.1.7686878. Protein 1e-40 48
swp_3330 YP_002312619.1 ABC transporter, ATP-binding protein NC_008702.1.4606598. Protein 4e-33 47
swp_3330 YP_002312619.1 ABC transporter, ATP-binding protein CP001581.1.gene598.p Protein 7e-27 44
swp_3330 YP_002312619.1 ABC transporter, ATP-binding protein CP001581.1.gene798.p Protein 1e-29 42
swp_3330 YP_002312619.1 ABC transporter, ATP-binding protein NC_012469.1.7686946. Protein 5e-23 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
swp_3330 YP_002312619.1 ABC transporter, ATP-binding protein VFG2059 Protein 4e-10 43
swp_3330 YP_002312619.1 ABC transporter, ATP-binding protein VFG0869 Protein 5e-18 42