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Name : swp_0187 (swp_0187) Accession : YP_002309617.1 Strain : Shewanella piezotolerans WP3 Genome accession: NC_011566 Putative virulence/resistance : Virulence Product : Type II secretion system protein E Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 201221 - 202870 bp Length : 1650 bp Strand : + Note : - DNA sequence : ATGAAGCCGAAACCGAGAAACCTGCTGAAACAACGAGTGATTCAAAGCCAGCCACCGATTCAGAGAAAGATTCAGCAGAT GAGTGATAATCAACTTCAGGCAGATGACGAACTAGCGCAAGTATCTAATGAGCTTGGGTTAGTTTCAGAGGCGGAAGCGG ATGAAGTCTTCCATTCGACGAGTAAAGAGCGTTTGCCGTTTGCCTTTGCTCACCGATTTAATGCGGCTTTAGATAAAGAT GAAGCGGGCGTACTGTCGCTTTATCATACTGCCGGGACGCCATTGTCAGCACTGTTAGAGGTTCGCCGTTATAGCGGTAA ATCTCTACCCCTCATTAAATTAGAAGATAGCGCCTTTGAAGCGCGCTTAACTCAAGCCTACCAAGCTAATTCGTCAGAAG CCCAGCAGATGATGGAAGATATTGGTAATGAGATGGATCTATTTACGCTTGCCGAAGAGCTACCTCAAACAGAAGATCTG CTAGAGGGTGACGATGACGCGCCGATTATTAAACTGATTAATGCGTTACTGTCTGAAGCGATTAAAGAAGAAGCGTCTGA TATCCATATTGAGACCTATGAAAAACAGCTGATAGTGCGTTTCCGTGTCGATGGGATCCTAAAAGAGGTGTTAAAACCTA ACCGCAAGCTGTCATCGCTATTAGTGTCACGTATCAAAGTCATGGCGCGCTTGGACATTGCCGAGAAACGTGTGCCTCAA GATGGCCGTATTTCACTGCGTATTGCGGGCCGTGCCGTCGACGTGCGTGTATCGACTATGCCATCAAGCCATGGCGAACG TGTAGTACTGCGTCTATTAGATAAAAATGCCGGTAATTTAGATCTGGTTCAATTAGGTATGACCGAGGATGTACGAGTAC AGTTCGATGAACTTATTCGTAAACCCCATGGGATTATTCTGGTTACTGGGCCAACAGGTTCTGGTAAGAGTACTACCTTA TACGCCGGTCTAACCGAGTTGAACTCCATTGATACTAATATTCTTACGGTCGAAGACCCTATCGAGTATGAGTTAGAAGG TATTGGTCAGACCCAAGTTAACACTAAGGTAGATATGACCTTTGCCCGTGGCTTGCGTGCGATATTACGTCAAGATCCCG ATGTGGTAATGATTGGTGAAATTCGAGATTTAGAGACCGCACAAATTGCAGTACAAGCTTCGCTAACGGGGCACATGGTG ATATCAACGCTGCATACTAATACAGCTTCTGGTGCGATTACCCGCTTACAAGATATGGGGGTCGAGCCTTTCCTTGTTTC ATCAAGTTTATTGGGTGTGCTTGCACAGCGACTAATCCGAACTTTATGTAAGCATTGTAAAGAGGAACATGTACCTGACG AGCGTGAAAGAGAGCTGTTAGGCATTACAGCAGATGATCCTAGCGTTATTTATCGTGCTAAAGGGTGTCAGGCTTGTGGA CATAACGGCTACCGTGGTCGTACCGGTATCCATGAGTTGTTAGTGGTTGATGATGAAGTACGTGAATTGATCCACACCGG TCGAGGCGAATTGGCGATTGAAAAGCATATACGTAAATCAGTGCCGAGTATCCGCCATGACGGTATGAGTAAAGTGCTTG CAGGGAAAACCACCCTTGAAGAAGTACTGCGTGTGACTCGCGAGGAGTAA Protein sequence : MKPKPRNLLKQRVIQSQPPIQRKIQQMSDNQLQADDELAQVSNELGLVSEAEADEVFHSTSKERLPFAFAHRFNAALDKD EAGVLSLYHTAGTPLSALLEVRRYSGKSLPLIKLEDSAFEARLTQAYQANSSEAQQMMEDIGNEMDLFTLAEELPQTEDL LEGDDDAPIIKLINALLSEAIKEEASDIHIETYEKQLIVRFRVDGILKEVLKPNRKLSSLLVSRIKVMARLDIAEKRVPQ DGRISLRIAGRAVDVRVSTMPSSHGERVVLRLLDKNAGNLDLVQLGMTEDVRVQFDELIRKPHGIILVTGPTGSGKSTTL YAGLTELNSIDTNILTVEDPIEYELEGIGQTQVNTKVDMTFARGLRAILRQDPDVVMIGEIRDLETAQIAVQASLTGHMV ISTLHTNTASGAITRLQDMGVEPFLVSSSLLGVLAQRLIRTLCKHCKEEHVPDERERELLGITADDPSVIYRAKGCQACG HNGYRGRTGIHELLVVDDEVRELIHTGRGELAIEKHIRKSVPSIRHDGMSKVLAGKTTLEEVLRVTREE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 3e-157 | 65 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 2e-157 | 65 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| swp_0187 | YP_002309617.1 | Type II secretion system protein E | VFG0182 | Protein | 3e-153 | 68 |
| swp_0187 | YP_002309617.1 | Type II secretion system protein E | VFG2048 | Protein | 2e-156 | 64 |
| swp_0187 | YP_002309617.1 | Type II secretion system protein E | VFG1876 | Protein | 2e-141 | 59 |
| swp_0187 | YP_002309617.1 | Type II secretion system protein E | VFG2426 | Protein | 2e-78 | 46 |
