|
Name : swp_1595 (swp_1595) Accession : YP_002310963.1 Strain : Shewanella piezotolerans WP3 Genome accession: NC_011566 Putative virulence/resistance : Virulence Product : Polysaccharide biosynthesis protein CapD Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG1086 EC number : 5.1.3.2 Position : 1639444 - 1641387 bp Length : 1944 bp Strand : + Note : - DNA sequence : ATGTTTTTTATGGCTGCTTTAAAAGTTTTATTTGCGCTTAAAAGGCGCAATAAACGTATCTTTAGCGTTTGTATGGATAT GATTTTTCTGGTTTTTTCCTTCTGGCTAGCCATGTTCGCCAGACTGGACTCTTTCGCCGTTTTAACAGTACCTGAAAATT GGTTATTAATCTCGGCTATTTTACCTATTAGTATTTTTGCTTTCGTACGTTTAGGGCTGTATCGAGCAGTGCTTCGTTAT ATGGGATTACAGGCACTTTCTGCCATTATTATTGGTATTGTGATTGCTGCAACTTCATTAGTTATTTTATCTTACTATGC TGAGTGGACGATTCCCCGAACCGTTCCGATTATTTTTTCCTTTTTTGCGTTTACTTTTATTGGCGGTTCTCGCTTCCTTA TTCGCTCTGTTATTGGCAACGGCAATAAAAAGCAGGGAGAGGCTGTCATTATTTATGGGGCTGGGGTTAGTGGTCGCCAA CTATTAACGTCTCTTAATCAAAGTCACGAATATCACGCCTTTGCGTTTGTCGATGATGATGAATCGTTACAGGGTAATAT AATACAGGGAGTGCACGTACATTCGCCTACGATTATAAGAAAACTGATCAAGCAAAAGTCTGCAACTAAAGTATTACTGG CTTTACCGAGTGCCAGTAGAAGCCAGCGACAGAGTATTCTAAAAAAACTAGAACCATTAGCGGTGCAGATTTTAACTATA CCGGGTATGTCTGATCTCGTATGTGGTAAAAAGCAATATTCAGATATTAAAGAAGTCGAGATTGACGACTTATTAGGTAG GGAAGCTGTGCCTCCGCGTCACGAGCTTATGTGCAGTAATATCACCAATAAAGTGGTGATGGTCACAGGTGCAGGTGGGT CTATTGGCTCTGAGATTTGCCGCCAAGTATTAAAGCTAAAGCCACAAAAGCTTGTATTATTTGAGCTGTCAGAGTTTGGC CTTTACTCGATTGATCGAGAATTATCTGCACTGGCCTTATCTTTGGATATTGAGCTAGAGGTATTACCATTAATAGGTTC TGTACAAAAACAAAATCGTGTACAGGCGATTATGGAATCATTTGGCGTGCAGACCGTTTATCATGCCGCAGCCTATAAAC ATGTACCATTAGTTGAGTATAACGTTGTTGAAGGTGTACGTAATAATATATTTGGCACGCTCTATACTGCTAAAGCCGCT ATTGCAGCTCACGTTGAAACTTTTGTTCTTATATCAACAGACAAAGCAGTTAGGCCTACAAATGTCATGGGTACGACTAA GCGTATGGCCGAACTCGCTCTGCAAGCATTGGCAAAAGAGTCTCACCGTACTCGCTTTTGTATGGTGCGTTTTGGCAACG TATTAGGCTCTTCGGGCTCGGTAGTGCCTTTGTTTAAGTCACAAATTGCTAAAAATGGCCCCGTTACCGTTACTCATCCT GATATCACGCGTTTTTTCATGACGATTCCTGAGGCGTCGCAATTAGTTATACAAGCAGGTGCTATGGGTAAAGGCGGAGA TGTCTTTGTACTTGATATGGGAAAGCCAATAAAGATTGTTGATCTGGCAGTTAAAATGATTCATTTAAGCGGTTTTACTG TTAAAGATGATCAAAACCCAGATGGTGACATCGAGGTTTCTTATGCGGGGTTAAGGCCAGGTGAAAAGCTATATGAAGAG TTGCTCATTGGTGATGATGTTGTGGGCACTGAGCATGAGCGTATTATGGCTGCCAACGAGCTTTCTTTGCCTTGGAGTCA ATACTCGATGATTTTAAGTCGGTTAGATCATGCATGCCACCGCCATGATCATCAAGAAATTAGAGAGATTTTGCTTTCTA CACCGACGGGATTTGTACCTAAAGATGGTATTTGCGATCTAGTATTTAAACAGTCGACTTTAAACAAATTCAACTCTGAA AAAATAGTCAGTTTGCTTGCGTAA Protein sequence : MFFMAALKVLFALKRRNKRIFSVCMDMIFLVFSFWLAMFARLDSFAVLTVPENWLLISAILPISIFAFVRLGLYRAVLRY MGLQALSAIIIGIVIAATSLVILSYYAEWTIPRTVPIIFSFFAFTFIGGSRFLIRSVIGNGNKKQGEAVIIYGAGVSGRQ LLTSLNQSHEYHAFAFVDDDESLQGNIIQGVHVHSPTIIRKLIKQKSATKVLLALPSASRSQRQSILKKLEPLAVQILTI PGMSDLVCGKKQYSDIKEVEIDDLLGREAVPPRHELMCSNITNKVVMVTGAGGSIGSEICRQVLKLKPQKLVLFELSEFG LYSIDRELSALALSLDIELEVLPLIGSVQKQNRVQAIMESFGVQTVYHAAAYKHVPLVEYNVVEGVRNNIFGTLYTAKAA IAAHVETFVLISTDKAVRPTNVMGTTKRMAELALQALAKESHRTRFCMVRFGNVLGSSGSVVPLFKSQIAKNGPVTVTHP DITRFFMTIPEASQLVIQAGAMGKGGDVFVLDMGKPIKIVDLAVKMIHLSGFTVKDDQNPDGDIEVSYAGLRPGEKLYEE LLIGDDVVGTEHERIMAANELSLPWSQYSMILSRLDHACHRHDHQEIREILLSTPTGFVPKDGICDLVFKQSTLNKFNSE KIVSLLA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| SSP0063 | YP_300153.1 | capsular polysaccharide biosynthesis protein | Not tested | SCC15305cap | Protein | 3e-78 | 43 |
| cap1D | AAA64643.1 | type 1 capsule synthesis gene | Virulence | SCCcap1 | Protein | 6e-80 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| swp_1595 | YP_002310963.1 | Polysaccharide biosynthesis protein CapD | VFG0029 | Protein | 6e-114 | 46 |
