Gene Information

Name : swp_1576 (swp_1576)
Accession : YP_002310946.1
Strain : Shewanella piezotolerans WP3
Genome accession: NC_011566
Putative virulence/resistance : Virulence
Product : UDP-GlcNAc C4 epimerase
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG0451
EC number : 5.1.3.7
Position : 1623473 - 1624549 bp
Length : 1077 bp
Strand : +
Note : -

DNA sequence : 
TTGATTTCTATTTTCAGCATTAAACATCATTTAGTTAAGCGAGACATTATGACAAAGTACCAAGAAGTACAAACTGATTT
ATTGGCTGCCTCTAAGACATGGCTTGTTACGGGGGTAGCAGGCTTTATCGGCTCAAACCTGCTAGAAAAACTGCTAAAAC
TTAACCAAACCGTAGTAGGTTTAGATAACTTCGCCACTGGCCATCAGCATAACCTCGATGAAGTTAAAAGCTTAGTAACA
ACAGAGCAATGGCAAAGGTTTATGTTCATCCAAGGAGATATTCGTAATCTAGATGATTGTAAAAAAGCAGTTACAGGTGT
TGATTACGTATTACATCAAGCTGCATTGGGCTCAGTACCACGTTCTATAAATGACCCTATTACTACAAATGAAGTCAATA
TCTCGGGCTTTTTAAATATGCTTGTCGCATCGCGTGATGAACAGGTTAAAAGTTTTACCTATGCGGCTTCAAGTTCAACA
TATGGTGATCATCCAGCGCTACCCAAAGTAGAAGAAAATATTGGAAACCCATTATCACCTTATGCAGTGACTAAATATGT
AAACGAGCTTTATGCTGGCGTATATGCACGTACATATGGTTTTAAGACCATTGGCCTTCGTTATTTTAATGTGTTCGGTC
AGCGACAAGACCCTAATGGTGCTTATGCTGCAGTTATTCCCAAATGGACTGCAGCAATGATTGAAGGCGAAGATATATTT
ATTAATGGTGATGGTGAGACTAGCCGAGATTTTTGTTATATTGGCAATACTGTTCAAATGAATATACTTGCAGCTACAGC
TTCAAGTGAATTAAAAGATAAAATTTATAATGTAGCGGTAGGAGATAGAACAAGTTTAAATCAACTTGTGCAAGCTATAA
AAGTGGAGTTAATCAAAAATGGTATAGAAATAAAAGGAAATTTGATTTACAGAGCTTTTAGAGACGGAGATGTTCGTCAT
TCTCAGGCTGATATCAATAAGGCTTGTACAAACCTCGGGTATGAACCAAAATTTGATATATTTAGCGGGCTAAATAATGT
AATGTCTTGGTATATTAATTTTCTGCGTAAAGGCTAA

Protein sequence : 
MISIFSIKHHLVKRDIMTKYQEVQTDLLAASKTWLVTGVAGFIGSNLLEKLLKLNQTVVGLDNFATGHQHNLDEVKSLVT
TEQWQRFMFIQGDIRNLDDCKKAVTGVDYVLHQAALGSVPRSINDPITTNEVNISGFLNMLVASRDEQVKSFTYAASSST
YGDHPALPKVEENIGNPLSPYAVTKYVNELYAGVYARTYGFKTIGLRYFNVFGQRQDPNGAYAAVIPKWTAAMIEGEDIF
INGDGETSRDFCYIGNTVQMNILAATASSELKDKIYNVAVGDRTSLNQLVQAIKVELIKNGIEIKGNLIYRAFRDGDVRH
SQADINKACTNLGYEPKFDIFSGLNNVMSWYINFLRKG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tviC NP_458739.1 Vi polysaccharide biosynthesis protein, epimerase Virulence SPI-7 Protein 2e-109 66
tviC NP_807944.1 VI polysaccharide biosynthesis epimerase Virulence SPI-7 Protein 2e-109 66

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
swp_1576 YP_002310946.1 UDP-GlcNAc C4 epimerase VFG0430 Protein 8e-110 66