Gene Information

Name : swp_1038 (swp_1038)
Accession : YP_002310428.1
Strain : Shewanella piezotolerans WP3
Genome accession: NC_011566
Putative virulence/resistance : Resistance
Product : ABC transporter, ATP-binding protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 1048734 - 1049495 bp
Length : 762 bp
Strand : +
Note : -

DNA sequence : 
ATGTTATCAATGAAGAACATCAACAAGGTATTTAAAACGGACTTAGTCGAAACACACGCATTACGTGATTTCAATTTGAA
TGTCGAGGAGGGCGAATTTGTCGCGGTTACCGGACCATCGGGGTCGGGAAAAACCACGTTTTTGAATATTGCAGGCTTAC
TTGAAGGCTTTACTCATGGCGACTTTTTCCTTGATGGTGTGAACATCTCAAACTTAAGTGACAATAAGAGCGCTGCGATT
CGTAACGAAAAAATTGGTTTCATCTTTCAGGGATTTAACTTAATCCCTGATCTTAACTTGGCTGAGAATGTTGAAGTGCC
TTTGCGTTATCGTGGTTTTAATGCCAAGGAGCGCAAAATACGTGTTGAGCGAGCGTTGGAACAGGTTGGTTTAGCCGCAA
GAATGAAACATCTCCCAACACAGTTATCGGGTGGACAGCAACAGCGCGTGGCGATTGCCAGAGCGCTTGCTGGCGAACCT
CGTTTCTTATTAGCGGATGAGCCAACGGGTAACTTGGACAGTTTGATGGCGCGCCAAGTAATGGAGTTATTAGAGGACAT
AAATAAGGCTGGCACTACCATTATCATGGTGACTCATGATGCAGAGCTTGCTCGCCGAGCACAACGCAACATTCAAATTG
TCGATGGGCAAGTGTGCGATTTCACCATGTATCAAGGCGAACAGGGGAGTGTAGCACAGGGGCAGTCGACACCAGATAAA
GGTGCTGCCGATGTTATTTCTGTCGCATCATCTGTCGCTTAA

Protein sequence : 
MLSMKNINKVFKTDLVETHALRDFNLNVEEGEFVAVTGPSGSGKTTFLNIAGLLEGFTHGDFFLDGVNISNLSDNKSAAI
RNEKIGFIFQGFNLIPDLNLAENVEVPLRYRGFNAKERKIRVERALEQVGLAARMKHLPTQLSGGQQQRVAIARALAGEP
RFLLADEPTGNLDSLMARQVMELLEDINKAGTTIIMVTHDAELARRAQRNIQIVDGQVCDFTMYQGEQGSVAQGQSTPDK
GAADVISVASSVA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-33 43
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-33 42
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 1e-33 42
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-33 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
swp_1038 YP_002310428.1 ABC transporter, ATP-binding protein NC_008702.1.4606598. Protein 3e-45 50
swp_1038 YP_002310428.1 ABC transporter, ATP-binding protein NC_012469.1.7686878. Protein 2e-50 49
swp_1038 YP_002310428.1 ABC transporter, ATP-binding protein CP001581.1.gene798.p Protein 2e-38 45
swp_1038 YP_002310428.1 ABC transporter, ATP-binding protein CP001581.1.gene598.p Protein 8e-32 41
swp_1038 YP_002310428.1 ABC transporter, ATP-binding protein NC_012469.1.7685735. Protein 5e-36 41