Gene Information

Name : TON_1890 (TON_1890)
Accession : YP_002308278.1
Strain : Thermococcus onnurineus NA1
Genome accession: NC_011529
Putative virulence/resistance : Unknown
Product : pyridoxal biosynthesis lyase PdxS
Function : -
COG functional category : H : Coenzyme transport and metabolism
COG ID : COG0214
EC number : -
Position : 1777491 - 1778498 bp
Length : 1008 bp
Strand : +
Note : with PdxT forms pyridoxal 5'-phosphate from glutamine, either ribose 5-phosphate or ribulose 5-phosphate, and either glyceraldehyde 3-phosphate or dihydroxyacetone phosphate

DNA sequence :
ATGGGAAAGCTCCACGTTATTGAGGCTAAGGGCACGGAGAGGCTGAAGCGCGGTTTTGCCAGGATGGTTAAAGGCGGCGT
CATAATGGACGTCACCAACGCCGAGCAGGCGAGGATTGCGGAAGAGGCAGGTGCAGTTTCTGTCATGGCCCTCCATAAAG
TTCCGGCCGACATTAGGAAGGCCGGCGGCGTCGCTAGGATGGCTCCGATAGAGAAGATCCAGGAAATAATGGACGCGGTA
ACGATTCCTGTCATGGCCAAGGTCAGGATAGGCCACGTCGCCGAGGCTAGAGTCCTTGAGGCGCTCGGTGTGGACATGAT
AGACGAGAGTGAGGTATTAACTCCAGCGGACCCGTTCTTCCACATAGACAAGAGGGAGTTCAACGTTCCCTTCGTCTGTG
GAGCGAGGAATCTTGGGGAGGCCGTCAGGAGGATATGGGAAGGCTCCGCCATGATAAGAACCAAGGGTGAGGCCGGAACC
GGCAACATCGTCGAGGCAGTCAGACACGTTAGGCTCGTCGCCGACAACATAAGGCTTATCCAGCGCATGACGGACGAGCA
GGTTTATGCCGTGGCTGAAAAGTTCGCCGAGCCGTACCTCAGACTGGCCAGACAGATAAGGGAAATAAGCGGCCTGCCGG
AGCAGATTCTCGAGAACGAGCCTGTTTACGGCCACTACACCTATCGCGAGATAGTTGACGGTCTCTACAAGATTCTCCTG
GAAATAAAGAAGCTCGGAAGATTGCCCGTGGTTAACTTCGCCGCCGGAGGAGTTGCCACTCCAGCCGACGCCGCCCTGAT
GATGCAGATGGGCATGGACGGCGTCTTCGTTGGTTCAGGCATCTTCAAGAGCTCCACTCCGGAGAAGATGGCCAGGGCAA
TAGTTGAAGCCGTTAACCACTGGGACGAGCCGGACGTTATAGCCGCGATAAGCAAAGAGATCGGCGAGCCCATGAAGGGC
CTGGAGATTGAGGAGCTCGAGGTCCGCCTCGAGGAGAGGGGCGTCTGA

Protein sequence :
MGKLHVIEAKGTERLKRGFARMVKGGVIMDVTNAEQARIAEEAGAVSVMALHKVPADIRKAGGVARMAPIEKIQEIMDAV
TIPVMAKVRIGHVAEARVLEALGVDMIDESEVLTPADPFFHIDKREFNVPFVCGARNLGEAVRRIWEGSAMIRTKGEAGT
GNIVEAVRHVRLVADNIRLIQRMTDEQVYAVAEKFAEPYLRLARQIREISGLPEQILENEPVYGHYTYREIVDGLYKILL
EIKKLGRLPVVNFAAGGVATPADAALMMQMGMDGVFVGSGIFKSSTPEKMARAIVEAVNHWDEPDVIAAISKEIGEPMKG
LEIEELEVRLEERGV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
pdxS YP_005137204.1 pyridoxine biosynthesis protein Not tested Not named Protein 2e-61 54
DIP0227 NP_938620.1 pyridoxal biosynthesis lyase PdxS Not tested Not named Protein 3e-61 54
pdxS YP_005141805.1 pyridoxine biosynthesis protein Not tested Not named Protein 3e-61 54