|
Name : fliP (HPP12_0697) Accession : YP_002301330.1 Strain : Helicobacter pylori P12 Genome accession: NC_011498 Putative virulence/resistance : Virulence Product : flagellar biosynthesis protein FliP Function : - COG functional category : N : Cell motility COG ID : COG1338 EC number : - Position : 742323 - 743105 bp Length : 783 bp Strand : + Note : FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus DNA sequence : TTGACTTCGTTTCATCAAAGATTTAAGGCTAGAATTTTGCGTTTTTTCATTTTTTTAATCCTCATTTGCCCTTTAATATG CCCTTTAATGAGCGCTGATAGCGCTTTGCCTAGCGTCAATCTCTCTTTAAACGCTCCTAATGATCCTAAACAGCTTGTAA CCACCCTTAATGTTATCGCCCTGCTCACGCTTTTAGTTTTAGCCCCGTCATTGATTTTAGTGATGACGAGTTTCACCCGT TTGATCGTGGTGTTTTCTTTTTTAAGGACCGCTTTAGGCACGCAACAAACCCCACCCACTCAAATTTTAGTCTCGCTCTC TTTGATATTGACTTTTTTCATCATGGAACCTAGCTTGAAAAAGGCTTATGATACAGGGATTAAGCCTTATATGGATAAAA AGATTTCTTACACCGAAGCGTTTGAAAAAAGCGCTCTGCCTTTCAAGGAATTCATGCTTAAAAACACACGAGAAAAGGAT CTGGCGCTTTTTTTTAGGATCAGAAACCTCCCTAACCCTAAAACCCCTGATGAGGTGAGCTTGAGCGTTTTAATCCCAGC ATTTATGATAAGCGAGTTGAAAACAGCGTTTCAAATCGGCTTTTTACTCTACTTGCCTTTTTTGGTGATTGATATGGTTA TTAGCTCTATTTTAATGGCGATGGGCATGATGATGCTCCCGCCTGTAATGATTTCTCTGCCTTTTAAAATTTTAGTGTTT ATTCTGGTGGATGGGTTTAATTTATTGACCGAAAATTTAGTGGCGAGTTTTAAAATGGTTTGA Protein sequence : MTSFHQRFKARILRFFIFLILICPLICPLMSADSALPSVNLSLNAPNDPKQLVTTLNVIALLTLLVLAPSLILVMTSFTR LIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMDKKISYTEAFEKSALPFKEFMLKNTREKD LALFFRIRNLPNPKTPDEVSLSVLIPAFMISELKTAFQIGFLLYLPFLVIDMVISSILMAMGMMMLPPVMISLPFKILVF ILVDGFNLLTENLVASFKMV |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| ssaR | NP_460384.1 | type III secretion system protein | Virulence | SPI-2 | Protein | 1e-25 | 46 |
| ssaR | CAA68199.1 | secretion system apparatus, SsaR | Virulence | SPI-2 | Protein | 9e-26 | 46 |
| ssaR | YP_216427.1 | type III secretion system protein | Virulence | SPI-2 | Protein | 1e-25 | 46 |
| yscR | NP_456109.1 | putative type III secretion protein | Virulence | SPI-2 | Protein | 7e-25 | 45 |
| yscR | NP_805090.1 | type III secretion system protein | Virulence | SPI-2 | Protein | 7e-25 | 45 |
| lscR | AAO18040.1 | LscR | Virulence | TTSS locus | Protein | 7e-24 | 42 |
| YPO0270 | YP_002345352.1 | type III secretion system protein | Virulence | Not named | Protein | 1e-22 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| fliP | YP_002301330.1 | flagellar biosynthesis protein FliP | VFG2338 | Protein | 6e-41 | 55 |
| fliP | YP_002301330.1 | flagellar biosynthesis protein FliP | VFG2016 | Protein | 1e-40 | 54 |
| fliP | YP_002301330.1 | flagellar biosynthesis protein FliP | VFG1259 | Protein | 1e-41 | 54 |
| fliP | YP_002301330.1 | flagellar biosynthesis protein FliP | VFG2494 | Protein | 1e-43 | 54 |
| fliP | YP_002301330.1 | flagellar biosynthesis protein FliP | VFG0519 | Protein | 5e-26 | 46 |
| fliP | YP_002301330.1 | flagellar biosynthesis protein FliP | VFG0044 | Protein | 1e-23 | 41 |
| fliP | YP_002301330.1 | flagellar biosynthesis protein FliP | VFG0394 | Protein | 1e-22 | 41 |
