Gene Information

Name : cagN (HPP12_0545)
Accession : YP_002301179.1
Strain : Helicobacter pylori P12
Genome accession: NC_011498
Putative virulence/resistance : Virulence
Product : cag pathogenicity island protein N
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 575554 - 576474 bp
Length : 921 bp
Strand : +
Note : -

DNA sequence : 
TTGAAAAGCATCTTCAAAAAACTAGGTTCTGTCGCTCTTTATTCTTTAGTTATTTATGGGGGCTTAAACGCTATCAATAC
AGCATTATTGCCGAGTGAATACAAAGAATTAGCGGCTTTGGGCTTTAAAAAAATCAAAACACTCCATCAAAGACATGGCG
ACGAAGAAATTACAGAAGAGGAAAAAAAATTCGCCACTAACGCTTTGAGAGAAAAATTACGAAATGATAGGGCAAGAGCA
GAGCAAATTCAAAAGAATATTGAAGCGTTTGAAAAAAAGAACAACTCTTCTGTTCAAAAAAAAGCGGCTAAGCACAAAGG
ATTACAAGAATTAAACGAAATTAACGCTACCCCTTTGAATGACAACCCTAATAGCAATTCTTCCGCTGAAACCAAATCTA
ATAAAGATGATAACTTTGATGAGATGATCAATAAGGTGAATGAAGCTTTTGTAAAACCTGCTGCTCCGCTTGTGCCTAAT
GAGTGGAGAACACCTGAAATTGAAATCATTATCAATGAGTGTATTATTTCAAGCAACGATTATGATGGGTTAAGAAAGTG
TTTGATCAAAGGCATCAAGGATCAAAAAATTCTTGCCCCCTTATTAGAAAAAATCCAAGAAATAGAGACAGAAAATAACA
AGTTTTCTAGACAACACTTGAGTGGTTTAAAACTCGCTCTTAATAACAGCAACAATAGAACCTTTCTTATAGCTTCATGC
ACTATTTGTGAGAAGAGAAAAAAAGAAATGGAGCAAGAAAATAACTACCAAGATACTACAAATGCAAGCAAGTTTGGCAC
TACTGATACAAAAGAAAATGAAGCAAAAGATGCAACATTCTCAAACAATCGCTCTAAATCTGAACTGCCCAATAGCGTCA
TTAATCAAATAGAACAAAGCATCGCTCATGAAAAAAAATAG

Protein sequence : 
MKSIFKKLGSVALYSLVIYGGLNAINTALLPSEYKELAALGFKKIKTLHQRHGDEEITEEEKKFATNALREKLRNDRARA
EQIQKNIEAFEKKNNSSVQKKAAKHKGLQELNEINATPLNDNPNSNSSAETKSNKDDNFDEMINKVNEAFVKPAAPLVPN
EWRTPEIEIIINECIISSNDYDGLRKCLIKGIKDQKILAPLLEKIQEIETENNKFSRQHLSGLKLALNNSNNRTFLIASC
TICEKRKKEMEQENNYQDTTNASKFGTTDTKENEAKDATFSNNRSKSELPNSVINQIEQSIAHEKK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
HP0538 NP_207334.1 cag pathogenicity island protein (cag17) Virulence cag PAI Protein 2e-126 96
HP0538 BAD14036.1 cag pathogenicity island protein Virulence cag PAI Protein 8e-126 96
cag17 AAR03930.1 Cag17 Virulence cag PAI Protein 2e-125 96
HP0538 ABC25004.1 cag pathogenicity island protein N Virulence cag PAI Protein 8e-122 95
HP0538 BAD13981.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-123 95
cagN YP_005774533.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-123 95
HP0538 BAD13954.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-119 95
HP0538 BAD14063.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-119 95
HP0538 BAD13844.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-120 95
cagN NP_223204.1 cag island protein Virulence cag PAI Protein 1e-124 95
cag17 AAR03961.1 Cag17 Virulence cag PAI Protein 4e-124 95
cagN YP_003728726.1 cag pathogenicity island protein N Virulence cag PAI Protein 4e-124 95
HP0538 BAD13926.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-123 94
HP0538 BAD13871.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-123 94
HP0538 BAD14009.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-118 94
cagN YP_005777279.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-118 94
HP0538 BAD13817.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-119 94
cagN YP_005775738.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-123 94
cagN AAF80207.2 CagN Virulence cag PAI Protein 3e-124 94
cag17 AAR03872.1 Cag17 Virulence cag PAI Protein 4e-125 94
HP0538 BAD13790.1 cag pathogenicity island protein Virulence cag PAI Protein 7e-118 93
HP0538 BAD13899.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-118 93
cagN YP_005779055.1 cag pathogenicity island protein Virulence cag PAI Protein 9e-118 93
cag17 AAR03900.1 Cag17 Virulence cag PAI Protein 7e-122 93

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
cagN YP_002301179.1 cag pathogenicity island protein N VFG0297 Protein 8e-127 96