Gene Information

Name : virB11-2 (HPP12_0532)
Accession : YP_002301166.1
Strain : Helicobacter pylori P12
Genome accession: NC_011498
Putative virulence/resistance : Virulence
Product : cag pathogenicity island protein Alpha
Function : -
COG functional category : N : Cell motility
COG ID : COG0630
EC number : -
Position : 558218 - 559210 bp
Length : 993 bp
Strand : -
Note : VirB11-like, cagAlpha

DNA sequence : 
ATGACTGAAGACAGATTGAGCGCAGAAGATAAAAAATTTCTAGAAGTAGAAAGAGCTTTAAAAGAAGCGGCATTAAATCC
TCTAAGGCATGCTACTGAAGAACTTTTTGGTGATTTTTTAAAAATGGAAAATATCACTGAGATTTGTTACAATGGGAACA
AGGTTGTATGGGTTTTAAAAAATAATGGCGAATGGCAACCATTTGATGTGAGAGACAAGAAAGCCTTTAGCCTGTCTCGT
TTAATGCATTTTGCTCGGTGTTGTGCAAGTTTTAAGAAAAAAACAATAGACAACTATGAAAATCCTATTTTGAGCAGCAA
TTTAGCGAATGGTGAAAGGGTGCAGATTGTCCTTTCCCCTGTTACAGTTAATGATGAAACCATTTCCATATCCATAAGGA
TACCTAGCAAAACAACCTACCCTCATAGCTTCTTTGAAGAGCAAGGTTTTTATAATCTACTAGACAACAAAGAACAAGCG
ATCAGTGCGATTAAAGATGGTATTGCTATTGGTAAAAATGTGATTGTTTGTGGTGGCACAGGAAGCGGTAAAACGACTTA
TATCAAAAGCATCATGGAGTTTATCCCTAAAGAAGAAAGGATCATATCCATTGAAGACACCGAAGAGATCGTATTCAAAC
ACCACAAGAACTACACACAGCTTTTTTTTGGTGGGAATATCACCTCTGCTGATTGCTTAAAGTCATGTTTGAGAATGCGG
CCTGATAGAATCATTCTAGGGGAACTCAGAAGCAGTGAGGCATACGATTTTTATAATGTGCTTTGTAGCGGTCATAAAGG
CACGCTAACCACTCTGCATGCAGGGAGCAGTGAAGAAGCGTTTATTCGTTTAGCCAACATGAGTTCATCTAATAGTGCAG
CAAGGAATATCAAGTTTGAAAGTCTCATTGAAGGCTTTAAAGATTTGATTGATATAATTGTTCATATCAACCACCACAAA
CAGTGTGATGAGTTTTATATCAAACATAGGTAG

Protein sequence : 
MTEDRLSAEDKKFLEVERALKEAALNPLRHATEELFGDFLKMENITEICYNGNKVVWVLKNNGEWQPFDVRDKKAFSLSR
LMHFARCCASFKKKTIDNYENPILSSNLANGERVQIVLSPVTVNDETISISIRIPSKTTYPHSFFEEQGFYNLLDNKEQA
ISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMR
PDRIILGELRSSEAYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLANMSSSNSAARNIKFESLIEGFKDLIDIIVHINHHK
QCDEFYIKHR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
HP0525 BAD13941.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-148 99
HP0525 BAD13804.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-148 99
HP0525 BAD13968.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-146 99
HP0525 BAD14050.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-148 99
virB11-2 YP_005777269.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-146 99
HP0525 BAD13996.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-148 99
HP0525 BAD14024.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-147 99
virB11-2 YP_005774544.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-148 99
cag-alfa AAF80196.1 Cag-alfa Virulence cag PAI Protein 3e-148 99
HP0525 BAD13913.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-147 99
virB11_1 NP_223192.1 cag island protein, DNA transfer protein Virulence cag PAI Protein 4e-148 99
HP0525 AAR03888.1 VirB11-like protein Virulence cag PAI Protein 3e-148 99
HP0525 BAD13886.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-148 99
HP0525 NP_207321.1 virB11-like protein Virulence cag PAI Protein 4e-148 99
HP0525 AAR03948.1 VirB11-like protein Virulence cag PAI Protein 3e-148 99
HP0525 AAR03917.1 VirB11-like protein Virulence cag PAI Protein 4e-148 99
virB11-4 YP_003728739.1 cag pathogenicity island protein alpha Virulence cag PAI Protein 4e-148 99
virB11 AGC69807.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-148 99
HP0525 AAR03859.1 VirB11-like protein Virulence cag PAI Protein 4e-148 99
virB11-2 YP_005779065.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-148 99
HP0525 BAD13831.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-148 99
HP0525 BAD13777.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-148 99
virB11-2 YP_005775728.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-148 99
HP0525 BAD13858.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-147 98

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
virB11-2 YP_002301166.1 cag pathogenicity island protein Alpha VFG0285 Protein 2e-148 99