Gene Information

Name : cag4 (HPP12_0530)
Accession : YP_002301164.1
Strain : Helicobacter pylori P12
Genome accession: NC_011498
Putative virulence/resistance : Virulence
Product : cag pathogenicity island protein Gamma
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 554980 - 555489 bp
Length : 510 bp
Strand : +
Note : cagGamma

DNA sequence : 
TTGTTTGGGAAATGGATTGGTCTGACTTTACTTCTTAATTCCTTAGCCTATCCATGCCAAAAAGTAACCATCAGTTTCAA
GCAATACGAGAATCTTATCCATATCCATCAAAAAGGCTGCGACAATGAAGTGGTGTGCAGAACGCTCATTTCTATCGCTT
TGTTAGAAAGCTCTCTAGGGTTGAACAACAGGCGAGAAAAATCCCTCAAAGACACTTCTTATTCCATGTTTCATATCACC
CTAAACACCGCTAAAAAATTCTACCCTACCTACTCTAAAACGCTTCTCAAAACCAAATTGCTAAACGATGTGGGTTTTGC
GATCCAATTAGCCAAACAAATTTTAAAAGAAAATTTTGATTATTACAAACAAAAACACCCTAACAAAAGCGTGTACCAAT
TAGTAGAAATGGCAATAGGTGCTTACAATGGGGGAATGAAACACGACCCTAATGGCGCTTACGTGAAGAAGTTTCGTTGC
ATTTATTCTCAAGTGCGATATAACGAGTAG

Protein sequence : 
MFGKWIGLTLLLNSLAYPCQKVTISFKQYENLIHIHQKGCDNEVVCRTLISIALLESSLGLNNRREKSLKDTSYSMFHIT
LNTAKKFYPTYSKTLLKTKLLNDVGFAIQLAKQILKENFDYYKQKHPNKSVYQLVEMAIGAYNGGMKHDPNGAYVKKFRC
IYSQVRYNE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cag4 AAR03946.1 Cag4 Virulence cag PAI Protein 2e-70 99
cag4 AAR03855.1 Cag4 Virulence cag PAI Protein 5e-69 98
HP0523 NP_207319.1 cag pathogenicity island protein (cag4) Virulence cag PAI Protein 2e-69 98
HP0523 BAD14022.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-68 96
cag4 AGC69794.1 cag pathogenicity island protein 4 Virulence cag PAI Protein 7e-67 95
cag4 AAR03886.1 Cag4 Virulence cag PAI Protein 1e-62 95
orf9 NP_223190.1 cag island protein Virulence cag PAI Protein 2e-63 95
HP0523 BAD13994.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-67 95
cag4 YP_003728743.1 cag pathogenicity island protein gamma Virulence cag PAI Protein 1e-66 95
cag4 YP_005774546.1 cag island protein Virulence cag PAI Protein 3e-67 95
cag-gamma AAF80194.1 Cag-gamma Virulence cag PAI Protein 6e-67 94
HP0523 BAD13802.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-67 94
cag4 YP_005777267.1 cag island protein Virulence cag PAI Protein 1e-66 94
HP0523 BAD13939.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-66 93
cag4 AAR03915.1 Cag4 Virulence cag PAI Protein 7e-67 93
cag4 YP_005779067.1 cag island protein Virulence cag PAI Protein 3e-66 93
HP0523 BAD13884.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-66 93
HP0523 BAD13775.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-66 93
HP0523 BAD14048.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-66 93
HP0523 BAD13856.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-65 92
cag4 YP_005775726.1 cag island protein Virulence cag PAI Protein 7e-65 92
HP0523 BAD13829.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-65 92
HP0523 BAD13911.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-66 92
HP0523 BAD13966.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-47 88

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
cag4 YP_002301164.1 cag pathogenicity island protein Gamma VFG0283 Protein 6e-70 98