|
Name : clpB (HPP12_0263) Accession : YP_002300901.1 Strain : Helicobacter pylori P12 Genome accession: NC_011498 Putative virulence/resistance : Virulence Product : ATP-dependent protease binding subunit Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 269483 - 272053 bp Length : 2571 bp Strand : + Note : heat shock protein DNA sequence : ATGAATTTATTTGAAAAGATGACTGACCAATTGCATGAGACTTTAGACAGCGCGCTCGCTTTAGCCTTACACCACAAAAA CGCTGAAGTAACGCCCTTGCACATGCTTTTTGCCATGCTCAATAACTCCCAAGGCATTCTTATTCAAGCCTTACAAAAAA TGCCTGTGGATATTCAAGCTTTAAGGCTTAGCGTTCAAAGCGAGCTGAATAAGTTCGCTAAAGTTTCACAAATCAACAAG CAAAATATCCAATTAAACCAAGCTCTAATCCAAAGTTTAGAAAACGCTCAAGGCTTGATGGCTAAAACGGGCGATTCTTT CATCGCTACCGATGTGTATCTTTTGGCGAATATGAGCCTTTTTGAAAGCGTTCTAAAGCCTTATTTAGACACTAAGGAAT TGCAAAAAACTTTAGAATCTTTAAGAAAAGGCACGACTATCCAAGGTAAAAACGATGATTCTAATTTGGAAAGTTTAGAA AAATTTGGCATTGATTTGACGCAAAAAGCTTTAGACAATAAGCTGGATCCTGTGATCGGAAGGGATGAAGAAATCATTCG CATGATGCAAATTTTGATAAGAAAAACAAAAAATAACCCTATTTTACTAGGTGAGCCTGGAGTGGGGAAAACGGCGGTTG TGGAAGGGTTAGCCCAACGCATTGTGAATAAGGAAGTGCCTAAAACGCTCTTAAACAAACGAGTCGTCGCTTTAGATTTA AGCTTATTGGTGGCTGGAGCGAAATACAGAGGCGAGTTTGAAGAGCGCTTGAAAAAGGTGATTGAAGAAGTTAAAAAAAG CGCGAATGTGATTTTATTCATTGATGAAATCCACACGATTGTGGGGGCTGGGGCTAGTGAGGGGGGCATGGATGCGGCTA ATATTTTAAAACCCGCGCTCGCTAGGGGGGAATTGCACACGATTGGAGCGACCACTTTAAAAGAATACCGCAAGTATTTT GAAAAAGACATGGCACTACAAAGGCGTTTCCAACCCATTTTACTCAATGAGCCTAGCATCAATGAAGCTTTACAGATTTT AAGGGGGTTGAAAGAAACTTTAGAAACGCACCATAATATCACCATCAATGACTCCGCGCTCATAGCGAGCGCTAAACTCT CTAGCCGTTATATCACCGATAGGTTTTTACCCGATAAGGCGATTGATTTGATTGATGAGGGGGCGGCTCAATTAAAAATG CAAATGGAATCAGAGCCGGCAAAACTCTCTAGCGTTAAGCGCTCCATTCAAAGACTAGAAATGGAAAAACAAGCCCTTGA AATGGAAAAAAAGGAAAGCAACCATAAACGCATGCAAGAAATCCTTAAAGAATTGAGCGATTTGAAAGAAGAAAAAATCC AATTAGAAGCACAATTTGAAAACGAAAAAGAAGTGTTCAAAGAAATTTCACGCTTGAAAATGGAAATGGAAAGCTTGAAA AAAGAGGCTGAGAGGTTTAAACGCAATGGGGATTTCCAGCAAGCGGCTGAAATTGAATATTCTAAAATCCCTGAAAATAA AAAGAAAGAAGAAGAATTGCAGCACAAATGGGAAACGATGCAACAAAATGGGGCGTTGTTGCAAAACGCTTTAACCGAAA ACAACATCGCTGAGATCGTGAGCCAATGGACGCACATCCCGGTCCAAAAAATGCTCCAAAGCGAAAAAAATAGGGTTTTA AACATTGAAAGCGAATTGCAAAAAAGGGTGGTGGGGCAAGAAAAAGCGATCAAAGCGATCGCTAAAGCGATTAAAAGGAA TAAGGCCGGCCTTAGCGATAGCAATAAACCTATAGGGAGTTTCCTCTTTTTAGGGCCAACAGGGGTGGGAAAAACTGAGA GCGCTAAAGCTTTGGCGCAATTCTTGTTTGATAGCGATAAAAATCTTATAAGAATTGACATGAGCGAATACCTAGAAAAG CACGCCATAAGCCGTCTTATTGGGGCCGCTCCTGGGTATGTGGGCTATGAAGAAGGCGGGCAATTGACCGAAGCGGTGCG CAGAAAGCCTTATAGCGTGGTGTTGTTAGATGAAGTGGAAAAAGCCCATCCGGATGTGTTTAACCTCTTGTTGCAGGTTT TAGATGAAGGGCATTTAACCGATAGTAAGGGCGTGAGGGTGGATTTCAAAAACACGATTTTGATTTTAACCAGCAATGTG GCTAGCGGCGCGCTTTTAGAAGAAAGTTTGAGCGAAGCCGATAAACAAAAAGCGATTAAAGAGAGCTTGAGGCAATTTTT CAAGCCGGAATTTTTAAACCGCCTAGATGAAATCATCTCCTTTAACGCCCTAGATAGTCATGCTATCATTAATATCGTGG GGATACTCTTTGAAAACATTCAAAAAAAAGCGCTTGAAAGGGGCATTAATATAACCTTAGACGAAAAGGCAAAAGAATTG ATCGCCGAAGCGGGATTTGACAGATTCTATGGCGCTAGACCCTTAAAACGCGCGCTCTATGAAATGGTAGAAGACAAGCT CGCTGAACTCATTTTAGAGGATAAAGTTAAAGAGAATGACAGCGTGGCGTTTGTGGTAGAAAATAACGAGATTGTGCCTA AGATTAAGTGA Protein sequence : MNLFEKMTDQLHETLDSALALALHHKNAEVTPLHMLFAMLNNSQGILIQALQKMPVDIQALRLSVQSELNKFAKVSQINK QNIQLNQALIQSLENAQGLMAKTGDSFIATDVYLLANMSLFESVLKPYLDTKELQKTLESLRKGTTIQGKNDDSNLESLE KFGIDLTQKALDNKLDPVIGRDEEIIRMMQILIRKTKNNPILLGEPGVGKTAVVEGLAQRIVNKEVPKTLLNKRVVALDL SLLVAGAKYRGEFEERLKKVIEEVKKSANVILFIDEIHTIVGAGASEGGMDAANILKPALARGELHTIGATTLKEYRKYF EKDMALQRRFQPILLNEPSINEALQILRGLKETLETHHNITINDSALIASAKLSSRYITDRFLPDKAIDLIDEGAAQLKM QMESEPAKLSSVKRSIQRLEMEKQALEMEKKESNHKRMQEILKELSDLKEEKIQLEAQFENEKEVFKEISRLKMEMESLK KEAERFKRNGDFQQAAEIEYSKIPENKKKEEELQHKWETMQQNGALLQNALTENNIAEIVSQWTHIPVQKMLQSEKNRVL NIESELQKRVVGQEKAIKAIAKAIKRNKAGLSDSNKPIGSFLFLGPTGVGKTESAKALAQFLFDSDKNLIRIDMSEYLEK HAISRLIGAAPGYVGYEEGGQLTEAVRRKPYSVVLLDEVEKAHPDVFNLLLQVLDEGHLTDSKGVRVDFKNTILILTSNV ASGALLEESLSEADKQKAIKESLRQFFKPEFLNRLDEIISFNALDSHAIINIVGILFENIQKKALERGINITLDEKAKEL IAEAGFDRFYGARPLKRALYEMVEDKLAELILEDKVKENDSVAFVVENNEIVPKIK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| STY0294 | NP_454876.1 | ClpB-like protein | Not tested | SPI-6 | Protein | 2e-97 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpB | YP_002300901.1 | ATP-dependent protease binding subunit | VFG0079 | Protein | 2e-153 | 42 |
| clpB | YP_002300901.1 | ATP-dependent protease binding subunit | VFG2076 | Protein | 3e-111 | 41 |
