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Name : serS (HPP12_1458) Accession : YP_002302086.1 Strain : Helicobacter pylori P12 Genome accession: NC_011498 Putative virulence/resistance : Unknown Product : seryl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG0172 EC number : - Position : 1537540 - 1538787 bp Length : 1248 bp Strand : - Note : catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA DNA sequence : ATGATTGATAAAAAACTTTTATTGCAAGATTTTGAGATGGTGGCTCTTTCTTTAAAAAAGCGTAACCATGCGATGGATGA TGGATTGGAGCGTTTGCGCGAAGTCATCACGCATTATAAAAAGCAACTCATTGAATTGGAAGGCTTGCAAGCCTTTCAAA ACAAGGTTTCTAAAGAATTTGGCATCAAAATGGCTCAAAAAGCGGATACAAGCGATCTCAAAAAAGAGCTAGAAAGCAAT AAAATCAAATTGAATGAGCTTTCTAAAAGCGTGAGCGAATTGGAGCAACAAATTGATTTGAAGCTTTCCATAATCCCTAA TCTAGTGGATGAAAAAACCCCTTTAGGCGCGAATGAAGAAGACAACATAGAAATTAAAAAAATCTTAACCCCAAGGGTTT TTAATTTCAAACCCAAAGAGCATTTTGAACTCGCTCAACAAAACGGCTGGATTGATTTTGAAAGCGGCGTGAAACTCGCC AAAAGCCGTTTTTCGGTCATTAGGGGTTTTGGGGCTAAAATTTATCGCGCGCTCATTTATTTAATGTTGGATTTTAATGA AAAAAATGGCTTTGAAATCATCTACACGCCGGCGTTAGTGAATGAAAAAATGCTTTTTGGGACCGGGCAATTACCCAAAT TCAAAGAAGATGTTTTCAAAATAGAAAATGAAAATTTGTATTTAATCCCCACCGCTGAAGTAACGCTCACTAATCTCTAC AACGACACGATCATTAGCGTTGAAAACCTCCCCATTAAAATGACCGCGCACACGCCTTGTTTTAGGAGCGAAGCAGGGAG CGCTGGCAAGGACACAAGGGGGATGATAAGACAGCACCAATTTGATAAAGTAGAGCTAGTGGCTATCACGCACCCTAAAG AAAGCGATGCGATGCAAGAGTGCATGCTAGAGAGCGCGAGCGAAATTTTAAGGGCTTTGGAATTGCCGCACCGGTTTGTG CAATTGTGCAGCGGGGATTTAGGCTTTAGCGCGAGCAACACGATAGACATTGAAGTGTGGTTGCCCGGGCAAAATTGTTA CAGAGAAATCAGCTCCGTGTCTAACACGAGGGATTTTCAGGCTAGGCGTGCCAAAATCCGCTTCAAAGAAAATCAAAAAA ACCAATTAGCACACACCTTAAACGGCTCTTCTTTAGCGGTAGGCAGGACGATGGTCGCTTTAATGGAAAACCACCAGCAA GCGGATGGGAGCATTCATATTCCTAAGGCGTTAGAAAAATACCTTTAA Protein sequence : MIDKKLLLQDFEMVALSLKKRNHAMDDGLERLREVITHYKKQLIELEGLQAFQNKVSKEFGIKMAQKADTSDLKKELESN KIKLNELSKSVSELEQQIDLKLSIIPNLVDEKTPLGANEEDNIEIKKILTPRVFNFKPKEHFELAQQNGWIDFESGVKLA KSRFSVIRGFGAKIYRALIYLMLDFNEKNGFEIIYTPALVNEKMLFGTGQLPKFKEDVFKIENENLYLIPTAEVTLTNLY NDTIISVENLPIKMTAHTPCFRSEAGSAGKDTRGMIRQHQFDKVELVAITHPKESDAMQECMLESASEILRALELPHRFV QLCSGDLGFSASNTIDIEVWLPGQNCYREISSVSNTRDFQARRAKIRFKENQKNQLAHTLNGSSLAVGRTMVALMENHQQ ADGSIHIPKALEKYL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| serS | YP_003446791.1 | seryl-tRNA synthetase | Not tested | The aminoglycoside resistance gene cluster | Protein | 5e-79 | 46 |
