Gene Information

Name : RC1_0475 (RC1_0475)
Accession : YP_002296725.1
Strain : Rhodospirillum centenum SW
Genome accession: NC_011420
Putative virulence/resistance : Virulence
Product : two component response transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 502915 - 503574 bp
Length : 660 bp
Strand : +
Note : -

DNA sequence : 
ATGAGGGTGCTGGTCGCGGAGGATGACGAGGCCCTGCGCCGCCAGCTCCGGGACGCGCTGGCAGCCTCCGGCTATGCGGT
GGATGAAGCGCCCGACGGGGAAGAGGCGGCCTTCCTGGGAGAGACCGAACCCTATGACGCCGTGGTCCTGGACCTGGGCC
TGCCGGTCCGGGACGGTCTGTCCGCCCTGCGCGGCTGGCGCCAGCAGGGCATCGTCACGCCGGTGCTGATCCTGACGGCG
CGCGGCACCTGGCAGGAGAAGGTGGAGGGCATCGACGCCGGCGCCGACGACTACCTGGCCAAGCCCTTCCGGATGGAGGA
ACTGCTGGCCCGGCTGCGCGCCCTGATCCGCCGGGCCGGCGGCCATGCCGCGGCGGACCTCCGGTGCGGCCCGGTGCTGC
TGGATACCCGCACCGGCCGGGTCAGCGTGGACGGTCGTCTCGTCTCCCTGACCGCCCACGAGTTGAAGGTGCTGGACTAT
CTGATGCACCACCAGGGCCGCGTCGTCTCGCGCACCGAGCTGACCGAGCATGTCTACGCCCAGGATTTCGACCGCGACAG
CAACACGATCGAAGTCTTCGTCGGCCGGCTGCGCCGCAAGCTGGGGGTGGACGTGATCCGCACGGAGCGCGGGCTGGGCT
ACCGCATGGATGCGGGGTGA

Protein sequence : 
MRVLVAEDDEALRRQLRDALAASGYAVDEAPDGEEAAFLGETEPYDAVVLDLGLPVRDGLSALRGWRQQGIVTPVLILTA
RGTWQEKVEGIDAGADDYLAKPFRMEELLARLRALIRRAGGHAAADLRCGPVLLDTRTGRVSVDGRLVSLTAHELKVLDY
LMHHQGRVVSRTELTEHVYAQDFDRDSNTIEVFVGRLRRKLGVDVIRTERGLGYRMDAG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 1e-20 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RC1_0475 YP_002296725.1 two component response transcriptional regulator NC_002516.2.879194.p Protein 1e-32 50
RC1_0475 YP_002296725.1 two component response transcriptional regulator CP000647.1.gene1136. Protein 1e-27 46
RC1_0475 YP_002296725.1 two component response transcriptional regulator BAC0530 Protein 1e-27 46
RC1_0475 YP_002296725.1 two component response transcriptional regulator CP004022.1.gene1005. Protein 8e-31 45
RC1_0475 YP_002296725.1 two component response transcriptional regulator CP001918.1.gene2526. Protein 9e-28 45
RC1_0475 YP_002296725.1 two component response transcriptional regulator CP001138.1.gene1939. Protein 4e-28 45
RC1_0475 YP_002296725.1 two component response transcriptional regulator BAC0487 Protein 9e-25 45
RC1_0475 YP_002296725.1 two component response transcriptional regulator CP000034.1.gene2022. Protein 2e-28 43
RC1_0475 YP_002296725.1 two component response transcriptional regulator NC_002695.1.913289.p Protein 2e-27 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RC1_0475 YP_002296725.1 two component response transcriptional regulator VFG0475 Protein 4e-28 45
RC1_0475 YP_002296725.1 two component response transcriptional regulator VFG1390 Protein 1e-19 45
RC1_0475 YP_002296725.1 two component response transcriptional regulator VFG0473 Protein 1e-21 42