Gene Information

Name : troB (RC1_2460)
Accession : YP_002298656.1
Strain : Rhodospirillum centenum SW
Genome accession: NC_011420
Putative virulence/resistance : Virulence
Product : zinc transport system ATP-binding protein TroB
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1121
EC number : -
Position : 2539129 - 2539908 bp
Length : 780 bp
Strand : +
Note : -

DNA sequence : 
ATGCTGCAACGGATCGGTGCGCACGACGTCGTTCCCCCGCGGGAGTCGGGCGTCGCCCCGCTGGCGGTGAGGGGGCTGAC
GGTCGCCTATCACGACCGGCCGGTGCTGCGCGATGTCAACTGGACCGCCCCGTCCGCCGGCCTGATCGCCATCTGCGGTC
CGAACGGGGCGGGCAAGAGCACCTTCATCAAGGCCTGCCTGGGGCTGGTGCCGCCGCTCTCCGGCACGGTCGAGATCTTC
GGCCGGTCGCTGGCGCGGCAGCGCCGGCTGGTCGGCTACGTGCCGCAGCGGGAGAGCGTGGACTGGGACTTCCCCGTCTC
CGCGCTCGATGTCGTGGCGATGGGCCGCTACGCCATGATCGGCTGGGGCCGGCGGGTGTCGAAGGAGCACAAGGAGGCGG
CCCGCGCCGCGCTGGAGCGGGTCGGCATGGGCGCCTTCGCCGACCGCCAGATCGGCCAGCTTTCCGGCGGCCAGCAGCAG
CGCGTGTTCCTGGCCCGCGCGCTGGCGCAGGAGGCGCATCTCTATTTCATGGACGAGCCCCTGGCCGGGGTGGACGCGGC
CACGGAGCAGGCCGTGCTGGAGGTGATGCGCGAGCTGGACCGGCAGGGCCGCACCGTGCTCTGCGTCCACCACGACCTGC
AGACCGTGGCGCAGGTGTTCGACCATGTGCTGCTGCTGAACACCCGCGTGGTGGCGGAGGGCAGCACCCGCACCACCCTG
ACGGAGGCGAACCTGCGCGCGACCTACGGCCAGCGCCTGCTGGACCCGCTGGTGATGTGA

Protein sequence : 
MLQRIGAHDVVPPRESGVAPLAVRGLTVAYHDRPVLRDVNWTAPSAGLIAICGPNGAGKSTFIKACLGLVPPLSGTVEIF
GRSLARQRRLVGYVPQRESVDWDFPVSALDVVAMGRYAMIGWGRRVSKEHKEAARAALERVGMGAFADRQIGQLSGGQQQ
RVFLARALAQEAHLYFMDEPLAGVDAATEQAVLEVMRELDRQGRTVLCVHHDLQTVAQVFDHVLLLNTRVVAEGSTRTTL
TEANLRATYGQRLLDPLVM

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitB NP_457256.1 Iron transport protein, ATP-binding component Virulence SPI-1 Protein 3e-43 43
sitB NP_806465.1 iron ABC transporter ATP-binding protein Virulence SPI-1 Protein 3e-43 43
sitB YP_217782.1 iron transporter: fur regulated Virulence SPI-1 Protein 1e-43 43
sitB NP_461783.1 ATP-binding protein Virulence SPI-1 Protein 6e-44 43
sitB AAD41066.1 SitB Virulence centisome 63 pathogenicity island Protein 4e-44 43
EF0575 NP_814340.1 cationic ABC transporter ATP-binding protein Not tested Not named Protein 3e-43 41
ef0093 AAM75296.1 EF0093 Not tested Not named Protein 2e-43 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
troB YP_002298656.1 zinc transport system ATP-binding protein TroB BAC0400 Protein 2e-64 58
troB YP_002298656.1 zinc transport system ATP-binding protein TroB BAC0350 Protein 3e-44 43
troB YP_002298656.1 zinc transport system ATP-binding protein TroB BAC0440 Protein 9e-43 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
troB YP_002298656.1 zinc transport system ATP-binding protein TroB VFG0526 Protein 2e-44 43