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Name : tetA (RC1_1688) Accession : YP_002297899.1 Strain : Rhodospirillum centenum SW Genome accession: NC_011420 Putative virulence/resistance : Resistance Product : tetracycline resistance protein, class C Function : - COG functional category : G : Carbohydrate transport and metabolism COG ID : COG2814 EC number : - Position : 1736419 - 1737711 bp Length : 1293 bp Strand : + Note : identified by match to protein family HMM PF02091 match to protein family HMM TIGR00388 DNA sequence : TTGTCCGCCCACCGCGCCGCCGCCCCCTTCATCCTTGTCACCCTGCTGCTCGACGTGCTGGCCTTCGGCCTGGCCATCCC GGTGATGCCGGAGCTGGTGCGCCGGCTGGTCGGCGGCGATCTGGACGTGGCGGCGACCTGGACCGGCATCCTGCTGGCCG GCTTTTCGCTCATGCAGTTCCTGTTCGCGCCGGTGCTGGGGGCGCTGAGCGACCGTTTCGGGCGGCGGCCGGTGCTGCTG GCCTCCGCCATCGGGACGGCGGTGGACCATCTGATCGTCGCCTTCTCCCCCACCATCTGGTGGCTGCTGGCCGGACGCCT GTTGAGCGGGGTGACGGCAGCCAGCTTCACCACCTGCAACGCCTACATCGCCGACGTGACCCCGCCGGAGAAGCGGGCCA AGGCGTTCGGCATGCTGGGAGCGGCCTTCGGCATCGGCTTCGTGCTGGGGCCGCTGGCCGGCGGTCTGCTGGGCTCGATC GACCCACGCCTGCCCTTCCTGGCGGCGGCGGGCCTTTCTTTCCTGAGCTTCCTCTACGGCCTGTTCGTCCTGCCGGAGTC GCTGCGGGCGGAGCACCGCCGCGCCTTCTCCTGGCGGCGCGCCAACCCGGCCGGGTCGCTGAAGGCCCTGGCCCGGCATC CGGTGGTGAAGGGACTGGCCGCAGCGAACGTCTGCAACTTCCTGGCCTTCGGGGCGCTGCACTCGGTCTGGGTGCTCTCC ACCACGGCCCGCTTCGGCTGGGGCAGCTTCGAGAACGGCCTGTCGCTGACGACCGTCGGGCTGGCGACCGCCTTCGTGCA GGGGGCGCTGGTCGGGCCGCTGGTGGCGAAGCTGGGCGACAAGCGCGCGCTCATTGCCGGGGCGATGACCAACGCCGCGG CCTATGCCGTCTACGCCCTGGCGCCCGCGGGCTGGGTGTTCCTGTCGGGGATCGCGCTGGGCGCGCTGGGCGGCATCGCC GGACCGGCGCTGCAGGGCATCATCAGCCGCATCGTCGGCGCCGACGAACAGGGCTCCATCCAGGGCGCCATGGCCAGCCT GAACAGCCTGACCATGATCGTGGCACCGATGATCGGCAGCACCCTGCTGGCGGTCTTCTCCGCCCCCGGGGCGCCGCTGC ACCTGCCCGGCATGCCGTTCCTGTTCGGCGCCGCCATGCTGGTGAGCGCGGCGGGCATCGCCGCCCTCACCCTGCGCCGC GGCGGCGGGCTGCCGGCGGACGACCGGGACGGCGGGAGCGGCCCCCTGCCCGTGCCCGACGCGGTGCCCGCCACGGCAAC CGCGCGGGAGTGA Protein sequence : MSAHRAAAPFILVTLLLDVLAFGLAIPVMPELVRRLVGGDLDVAATWTGILLAGFSLMQFLFAPVLGALSDRFGRRPVLL ASAIGTAVDHLIVAFSPTIWWLLAGRLLSGVTAASFTTCNAYIADVTPPEKRAKAFGMLGAAFGIGFVLGPLAGGLLGSI DPRLPFLAAAGLSFLSFLYGLFVLPESLRAEHRRAFSWRRANPAGSLKALARHPVVKGLAAANVCNFLAFGALHSVWVLS TTARFGWGSFENGLSLTTVGLATAFVQGALVGPLVAKLGDKRALIAGAMTNAAAYAVYALAPAGWVFLSGIALGALGGIA GPALQGIISRIVGADEQGSIQGAMASLNSLTMIVAPMIGSTLLAVFSAPGAPLHLPGMPFLFGAAMLVSAAGIAALTLRR GGGLPADDRDGGSGPLPVPDAVPATATARE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| tetA(A) | AGK07027.1 | TetA(A) | Not tested | SGI1 | Protein | 4e-36 | 45 |
| tetA(A) | AGK07085.1 | TetA(A) | Not tested | SGI1 | Protein | 4e-36 | 45 |
| tetA | YP_006098396.1 | tetracycline resistance protein | Not tested | Tn2411 | Protein | 5e-36 | 45 |
| tetA(A) | ACK44537.1 | TetA(A) | Not tested | SGI1 | Protein | 4e-36 | 45 |
| tetA | CAJ77066.1 | Tetracycline resistance protein | Not tested | AbaR1 | Protein | 3e-36 | 45 |
| tetA(A) | ACN81011.1 | TetA(A) | Not tested | AbaR5 | Protein | 4e-36 | 45 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| tetA | YP_002297899.1 | tetracycline resistance protein, class C | AY264780.2.gene3.p01 | Protein | 2e-48 | 45 |
| tetA | YP_002297899.1 | tetracycline resistance protein, class C | NC_011586.7045189.p0 | Protein | 9e-34 | 45 |
| tetA | YP_002297899.1 | tetracycline resistance protein, class C | AF534183.gene.p01 | Protein | 2e-36 | 45 |
| tetA | YP_002297899.1 | tetracycline resistance protein, class C | NC_010410.6002597.p0 | Protein | 2e-36 | 45 |
| tetA | YP_002297899.1 | tetracycline resistance protein, class C | CP001485.1.gene2821. | Protein | 2e-36 | 45 |
| tetA | YP_002297899.1 | tetracycline resistance protein, class C | Y19114.gene.p01 | Protein | 6e-39 | 44 |
| tetA | YP_002297899.1 | tetracycline resistance protein, class C | X75761.gene.p01 | Protein | 1e-35 | 44 |
