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Name : gabD (RC1_1593) Accession : YP_002297809.1 Strain : Rhodospirillum centenum SW Genome accession: NC_011420 Putative virulence/resistance : Unknown Product : succinate-semialdehyde dehydrogenase Function : - COG functional category : C : Energy production and conversion COG ID : COG1012 EC number : 1.2.1.16 Position : 1638539 - 1640065 bp Length : 1527 bp Strand : - Note : identified by match to protein family HMM PF01281 match to protein family HMM PF03948 match to protein family HMM TIGR00158 DNA sequence : ATGACGAGCGATACCGCGACGAGAGACACCGCCACGAGAGACACCGCCACGGCGGGCACCCCGGCCCGCCTGGGCCTCTC CGACCCCGGCCTGTTCCGGCAGGACTGCTTCGTGGACGGGCAGTGGATCGGCGCCGACTCCGGCAAGACCATCGCCGTCA CGAACCCCGCCGACGGCAGCACCCTGGGCAGCGTCCCCGCCATGGGGGCGGCGGAGGCGCGCCGCGCCATCGCGGCGGCG GAGCGCGCCTGGCCGGCCTGGCGGACGAAGACGGCGAAGGAGCGGGCGCAGGTGCTGCGCCGCTGGTACGAACTGATGCT GGCGCACCAGGAGGATCTGGCGCGCATCATGACGGCCGAGCAGGGCAAGCCCCTGGCCGAGAGCCGCGGCGAGATCGTCT ATGCCGCCAACTTCCTGGAATGGTTCGCGGAAGAGGCGAAGCGCGTCTACGGCGACGTGATCCCGACCCACCGGCCGGGA TCGCGCATCGTCGTCGTCAAGGAGCCGGTTGGCGTCACCGCGGCCATCACGCCCTGGAACTTCCCCGCCGCGATGATCAC CCGCAAGGCCGGCCCGGCCCTGGCGGCGGGCTGCCCGATGGTGGTGAAGCCGGCCAGCTACACGCCGTTCAGCGCGCTCG CCATGGCCGTGCTGGCGGAGCGCGCGGGCGTGCCGCCGGGGGTTCTCTCCGTCGTCACCGGCTCGGCCGGCGCCATCGGC GGCGAGTTCACGTCCAACCCCGCCGTGCGCAAGCTGTCCTTCACCGGCTCGACGGAGATCGGCAAGACGCTGATGGCCCA GTGCGCCGGCACGGTGAAGAAGCTGAGCCTGGAACTGGGCGGCAACGCCCCCTTCATCGTGTTCGACGATGCCGACCTGG ACGCGGCGGTGCAGGGCGCCATCGCTTCCAAGTACCGCAACACCGGCCAGACCTGCGTCTGTGCCAACCGCCTGCTGGTG CAGGACGGCGTCTACGACGCCTTCGCGGCCAGGCTGGCCGACGCCGTGCGCGGGCTGAAGGTGGCGAACGGCCTGGAGGA CGGGGCGACGCAGGGCCCGCTGATCGACATGGCCGCCGTGGAGAAGGTGGAGGAGCACATCCGCGACGCCGTGTCGAAGG GCGCGCGGATCGTCACCGGCGGCCGGCGCCATGCGCTGGGCGGCAGCTTCTTCGAGCCGACCGTGCTGGCCGACGTGACG CCGGCCATGGCCGTGGCGCGGGAGGAGACGTTCGGGCCGGTGGCGCCCCTGTTCCGCTTCAAGGACGAGGCGGAGGCGAT CCACCTCGCCAACGCCACCGAATACGGCCTCGCCGCCTATTTCTATGCCCGCGACCTGGGCCGCGTCTGGCGCGTAGCGG AGGCGCTGGAATACGGGATCATCGGCATCAACGAAGGCATCATCTCCACCGAGGTGGCCCCCTTCGGCGGCATGAAGGAG AGCGGGCTGGGCCGCGAGGGCTCGAAGTACGGGCTCGACGAGTATCTGGAGATCAAATACCTGCTGATGGGCGGCATCGG CGCCTGA Protein sequence : MTSDTATRDTATRDTATAGTPARLGLSDPGLFRQDCFVDGQWIGADSGKTIAVTNPADGSTLGSVPAMGAAEARRAIAAA ERAWPAWRTKTAKERAQVLRRWYELMLAHQEDLARIMTAEQGKPLAESRGEIVYAANFLEWFAEEAKRVYGDVIPTHRPG SRIVVVKEPVGVTAAITPWNFPAAMITRKAGPALAAGCPMVVKPASYTPFSALAMAVLAERAGVPPGVLSVVTGSAGAIG GEFTSNPAVRKLSFTGSTEIGKTLMAQCAGTVKKLSLELGGNAPFIVFDDADLDAAVQGAIASKYRNTGQTCVCANRLLV QDGVYDAFAARLADAVRGLKVANGLEDGATQGPLIDMAAVEKVEEHIRDAVSKGARIVTGGRRHALGGSFFEPTVLADVT PAMAVAREETFGPVAPLFRFKDEAEAIHLANATEYGLAAYFYARDLGRVWRVAEALEYGIIGINEGIISTEVAPFGGMKE SGLGREGSKYGLDEYLEIKYLLMGGIGA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| orf17 | AAO17183.1 | Orf17 | Not tested | tcd island | Protein | 9e-148 | 67 |
