Gene Information

Name : ECSE_P1-0010 (ECSE_P1-0010)
Accession : YP_002296035.1
Strain :
Genome accession: NC_011419
Putative virulence/resistance : Virulence
Product : tetracycline repressor protein TetR
Function : -
COG functional category : K : Transcription
COG ID : COG1309
EC number : -
Position : 6503 - 7162 bp
Length : 660 bp
Strand : -
Note : -

DNA sequence :
ATGAACAAGCTCCAACGCGAGGCCGTGATCCGAACCGCGCTCGAACTGCTTAACGACGTGGGCATGGAAGGTCTAACGAC
GCGCCGACTGGCTGAGCGCCTCGGGGTGCAACAGCCAGCGCTCTACTGGCATTTCAAGAACAAGCGTGCGTTGCTCGACG
CACTTGCCGAAGCCATGCTGACGATAAATCACACGCATTCGACGCCAAGGGATGACGACGACTGGCGTTCGTTCCTGAAG
GGCAATGCATGCAGTTTTCGACGGGCGTTGCTCGCTTATCGCGATGGCGCGCGTATTCATGCCGGGACGCGGCCAGCCGC
GCCGCAGATGGAAAAAGCCGACGCGCAGCTTCGCTTCCTTTGCGATGCTGGCTTTTCGGCAGGTGACGCGACCTATGCGT
TGATGGCAATCAGCTACTTCACCGTCGGCGCTGTTCTTGAGCAGCAAGCTAGCGAGGCAGACGCCGAGGAGCGGGGCGAA
GATCAGTTGACCACCTCAGCGTCTACGATGCCGGCGCGCCTACAGAGCGCGATGAAAATCGTCTACGAAGGCGGTCCGGA
CGCGGCATTCGAGCGAGGCCTGGCTCTCATCATCGGCGGTCTTGAAAAAATGAGGCTCACTACGAACGACATTGAGGTGC
TGAAGAATGTTGACGAATGA

Protein sequence :
MNKLQREAVIRTALELLNDVGMEGLTTRRLAERLGVQQPALYWHFKNKRALLDALAEAMLTINHTHSTPRDDDDWRSFLK
GNACSFRRALLAYRDGARIHAGTRPAAPQMEKADAQLRFLCDAGFSAGDATYALMAISYFTVGAVLEQQASEADAEERGE
DQLTTSASTMPARLQSAMKIVYEGGPDAAFERGLALIIGGLEKMRLTTNDIEVLKNVDE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tetR(A) ACK44536.1 TetR(A) Not tested SGI1 Protein 1e-71 70
tetR(A) AGK07026.1 TetR(A) Not tested SGI1 Protein 1e-71 70
tetR(A) AGK07084.1 TetR(A) Not tested SGI1 Protein 1e-71 70
tetR YP_006098395.1 tetracycline repressor Not tested Tn2411 Protein 2e-71 70
tetR CAJ77065.1 Tetracycline repressor protein Not tested AbaR1 Protein 1e-71 70
tetR(A) ACN81010.1 repressor protein Not tested AbaR5 Protein 2e-71 70
tetR(G) AGK07103.1 TetR(G) Not tested SGI1 Protein 3e-53 58
tetR AAK02050.1 tetracycline resistance regulator protein Not tested SGI1 Protein 3e-53 58
tetR ABZ01841.1 TetR Not tested SGI2 Protein 3e-53 58
tetR CAJ77033.1 Tetracycline repressor protein Not tested AbaR1 Protein 3e-53 58
tetR(G) AGK06973.1 TetR(G) Not tested SGI1 Protein 3e-53 58
tetR AEA34668.1 tetracycline repressor protein Not tested Not named Protein 3e-49 54
BJAB07104_00278 YP_008207743.1 Transcriptional regulator Not tested AbaR25 Protein 4e-49 54
BJAB0868_00282 YP_008211608.1 Transcriptional regulator Not tested AbaR26 Protein 4e-49 54
tetR YP_005797161.1 tetracycline repressor protein class G Not tested AbaR4e Protein 3e-49 54
tetR AFH57203.1 repression protein Not tested AbaR4a Protein 2e-49 54
tetR(B) AEQ20906.1 tetracycline repressor protein Not tested Tn6166 Protein 3e-49 54
tetR AFV47970.1 repressor protein TetR Not tested AbaR25 Protein 2e-49 54
tetR(B) AEZ06046.1 repressor protein Not tested Tn6167 Protein 3e-49 54
tetR AFV47998.1 repressor protein TetR Not tested delta-AbaR25 Protein 2e-49 54
ABZJ_00261 YP_005524217.1 tetracycline repressor protein TetR Not tested AbaR22 Protein 3e-49 54
tetR1 YP_005176239.1 tetracycline repressor protein Not tested ICEPmu1 Protein 1e-50 53
tetR2 YP_005176247.1 tetracycline repressor protein Not tested ICEPmu1 Protein 1e-50 53
tetR AAL08444.1 tet repressor Not tested SRL Protein 1e-48 53

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ECSE_P1-0010 YP_002296035.1 tetracycline repressor protein TetR VFG1035 Protein 6e-49 53