Gene Information

Name : ECSE_3125 (ECSE_3125)
Accession : YP_002294400.1
Strain : Escherichia coli SE11
Genome accession: NC_011415
Putative virulence/resistance : Virulence
Product : putative type III secretion protein
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4794
EC number : -
Position : 3240937 - 3241122 bp
Length : 186 bp
Strand : -
Note : -

DNA sequence :
ATGGACGATATTGTTTTTGCGGGGAATAGGGCGCTGTATCTGATTTTAGTTATGTCTGCAGGACCTATTGCAGTTGCGAC
ATTTGTTGGTTTATTGGTAGGGCTTTTTCAAACGGTAACGCAGTTGCAAGAACAGACGTTGCCATTTGGCGTGAAATTAT
TGTGCGTAAGTATTTGCTTTTTTTAA

Protein sequence :
MDDIVFAGNRALYLILVMSAGPIAVATFVGLLVGLFQTVTQLQEQTLPFGVKLLCVSICFF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ECs3724 NP_311751.1 EpaQ Not tested LIM Protein 9e-23 100
epaQ AAZ31292.1 EpaQ Virulence ETT2 Protein 8e-23 99
spaQ AAS66866.1 SpaQ Not tested SSR-2 Protein 2e-18 74
spaQ YP_217808.1 surface presentation of antigens; secretory proteins Virulence SPI-1 Protein 2e-16 74
spaQ NP_457283.1 secretory protein (associated with virulence) Virulence SPI-1 Protein 2e-16 74
spaQ NP_806492.1 virulence-associated secretory protein Virulence SPI-1 Protein 2e-16 74
spaQ NP_461810.1 needle complex export protein Virulence SPI-1 Protein 2e-16 74
ysaS AAS66847.1 YsaS Not tested SSR-1 Protein 9e-12 65

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ECSE_3125 YP_002294400.1 putative type III secretion protein VFG0550 Protein 7e-17 74
ECSE_3125 YP_002294400.1 putative type III secretion protein VFG2454 Protein 2e-08 59