|
Name : clpB (OCAR_4780) Accession : YP_002287785.1 Strain : Oligotropha carboxidovorans OM5; ATCC 49405 Genome accession: NC_011386 Putative virulence/resistance : Virulence Product : ATP-dependent chaperone ClpB Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 764749 - 767382 bp Length : 2634 bp Strand : + Note : - DNA sequence : ATGAATATTGAGAAATATACCGACCGGGTGAAGGGATTCATTCAGTCGGCGCAATCGCTGGCGCTGCGCGAGGGCCATCA GCAGTTCTCGCCGCTCCACATCCTGAAGGTGCTGCTCGATGACAGCGAGGGGCTTTCGGGCGGTCTGATCGACCGCGCCG GCGGCAACTCGCGAGCGATCCTGCAGGCAACCGAACAGGCGCTCGCCAAGCTGCCGAAAGTCTCAGGCGGCGGAGCGGGG CAAATTTATCTCGCGCCGGAAACCGCGCGCGCGTTCTCGGCCGCCGAGCAGGCTGCGGAAAAGGCCGGCGACAGTTTCGT GACTGTTGAGCGGCTTCTGCTGGCGCTCTCACTCGACAAGGAAAGCGAGGCGGGCAAGCTCCTCGCTCAGGGCGGTGTTA CGCCACAAAACCTCAATGCCGCGATCAACGCGCTGCGCAAGGGCCGTACCGCCGACAGCGCGTCGGCGGAAAACGCCTAT GACGCGTTGAAGAAATATGCCCGCGACCTCACCCAGGCCGCGCGTGACGGCAAGCTCGATCCGGTGATTGGCCGCGACGA GGAAATCCGCCGCACCATTCAGGTTCTCTCCCGCCGCACCAAGAATAATCCTGTGCTGATCGGTGAGCCCGGCGTCGGCA AGACCGCCATCGTCGAGGGACTTGCCTTACGCATTCTCAACGGCGACGTGCCGGAGAGCCTCAAGGACAAGAAGCTGCTG GCGCTTGACCTCGGCGCGTTGATCGCCGGCGCGAAATATCGCGGCGAGTTCGAGGAGCGGCTCAAGGCCGTGCTGCAGGA AGTCACTGCCGCCGAAGGCGGCATCGTGCTGTTCATCGACGAGATGCACACGCTGATCGGCGCGGGCAAGGCGGATGGCG CGATGGACGCCTCCAACCTGCTCAAGCCGGCATTGGCGCGTGGCGAACTGCACTGCATCGGCGCGACGACGCTCGATGAG TACCGCAAGCATGTCGAGAAGGATGCGGCGCTGGCGCGGCGCTTCCAGCCGGTGTTCGTCTCCGAGCCGACCGTCGAGGA CACGGTCTCGATCCTGCGCGGCCTCAAGGAGAAATACGAACTGCATCACGGCGTGCGCATCGCCGATTCCGCGCTGGTCG CGGCGGCGACGCTGTCGAACCGCTACATCACCGACCGCTTCCTGCCAGACAAGGCGATTGACCTCGTCGACGAGGCGGCG GCGCGGCTGAAGATGCAAATCGATTCCAAGCCGGAAGAGCTCGACTCGCTCGACCGCGAGATCGTGCGGCTGAAGATCGA GCAGGAGGCGCTGAAGAAGGAGACCGATGCGGGCTCCAAGAGCCGGCTGCAGACGCTCGAGACGGATCTGGCCGAACTTG AGAAGAAGTCGGCCGACCTCACCTCGAAGTGGCAGTCGGAAAAGAGCAAGCTTTCGGACGCGCAGAAGCTCAAGAGCGAA CTCGAGCAGGCGCGCACCGAACTCGCCAACGCCCAGCGCAAGGGCGAGTACCAGCGCGCGGGTGAACTGGCCTACGGCCG CATCCCGGAGCTTGAGAAGAAGCTCGCGGCGGTCGAGGCGAGCGAGAGCACGTCCACGATCGACGAGGCGGTTACCGCCG ACAACATCGCGCAGGTGGTGTCGCGTTGGACCGGTGTGCCGGTCGACAAGATGCTGGAAGGCGAGAAGGACAAGCTCCTA CGTATGGAGGAGATGCTCGGCCAGCGTGTCATCGGTCAGGCACAGGCGGTGCGCGCGGTCTCGACCGCGGTGCGGCGTGC GCGTGCCGGCTTGCAGGACCCGAACCGGCCGATCGGCTCGTTCATGTTCTTGGGCCCCACCGGCGTCGGCAAAACCGAGC TCACCAAAGCGCTCGCCGAATATCTTTTCGACGACGAGACCGCACTCGTGCGCATGGATATGTCCGAGTACATGGAGAAG CATTCGGTCGCGCGGCTGATCGGTGCACCTCCGGGCTATGTCGGTTATGACGAGGGCGGTGCGCTTACCGAAGCGGTGCG GCGCCGGCCTTATCAGGTCGTGCTGTTCGACGAGATCGAGAAGGCGCATCCGGACGTGTTCAACGTCCTGTTGCAGGTGC TCGACGACGGCCGTTTGACCGACGGTCAGGGCCGCACCGTCGACTTCCGCAATACGTTGATCATCATGACCTCGAACATC GGCGCGGAATTCCTCGTCAACCAGCCGGAGGGCGAGGATACGGGCGCGGTGCGCGATCAGGTGATGGGCATGGTGCGCAC GCACTTCCGCCCGGAATTCCTGAACCGCATTGATGAGATCATCCTGTTCCATCGCCTGCAGAAGAGCGAGATGGGCCGGA TCGTCGACATCCAGCTCAACCGGCTGCGCAAGCTCCTCGAGGATCGCAAGATCGAACTCCATCTTGATGCGAAGGCGCGT GACTGGCTCGCGGAGAAGGGCTGGGACCCGGCCTATGGCGCGCGTCCGTTAAAGCGCGTGATCCAGCGCAGCGTGCAGGA TTCGCTCGCCGAGATGGTGCTGGCGGGCGAGGTGCTGGACGGTGCGACGGTGAAAATCTCGGCCGGCAAGACCGGGCTGA CCTTCAACGGCAAGCCTGCCTCTCGGATCGAGGATGAAGAGGCCGAGGCGCCGCCGAAGCGGATGATGAACTAA Protein sequence : MNIEKYTDRVKGFIQSAQSLALREGHQQFSPLHILKVLLDDSEGLSGGLIDRAGGNSRAILQATEQALAKLPKVSGGGAG QIYLAPETARAFSAAEQAAEKAGDSFVTVERLLLALSLDKESEAGKLLAQGGVTPQNLNAAINALRKGRTADSASAENAY DALKKYARDLTQAARDGKLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLALRILNGDVPESLKDKKLL ALDLGALIAGAKYRGEFEERLKAVLQEVTAAEGGIVLFIDEMHTLIGAGKADGAMDASNLLKPALARGELHCIGATTLDE YRKHVEKDAALARRFQPVFVSEPTVEDTVSILRGLKEKYELHHGVRIADSALVAAATLSNRYITDRFLPDKAIDLVDEAA ARLKMQIDSKPEELDSLDREIVRLKIEQEALKKETDAGSKSRLQTLETDLAELEKKSADLTSKWQSEKSKLSDAQKLKSE LEQARTELANAQRKGEYQRAGELAYGRIPELEKKLAAVEASESTSTIDEAVTADNIAQVVSRWTGVPVDKMLEGEKDKLL RMEEMLGQRVIGQAQAVRAVSTAVRRARAGLQDPNRPIGSFMFLGPTGVGKTELTKALAEYLFDDETALVRMDMSEYMEK HSVARLIGAPPGYVGYDEGGALTEAVRRRPYQVVLFDEIEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTLIIMTSNI GAEFLVNQPEGEDTGAVRDQVMGMVRTHFRPEFLNRIDEIILFHRLQKSEMGRIVDIQLNRLRKLLEDRKIELHLDAKAR DWLAEKGWDPAYGARPLKRVIQRSVQDSLAEMVLAGEVLDGATVKISAGKTGLTFNGKPASRIEDEEAEAPPKRMMN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| STY0294 | NP_454876.1 | ClpB-like protein | Not tested | SPI-6 | Protein | 1e-99 | 43 |
| aec27 | YP_851418.1 | ATPase | Not tested | PAI II APEC-O1 | Protein | 4e-100 | 42 |
| aec27 | AAQ96721.1 | Aec27 | Not tested | AGI-1 | Protein | 3e-100 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpB | YP_002287785.1 | ATP-dependent chaperone ClpB | VFG0079 | Protein | 4e-162 | 51 |
| clpB | YP_002287785.1 | ATP-dependent chaperone ClpB | VFG2084 | Protein | 2e-106 | 44 |
| clpB | YP_002287785.1 | ATP-dependent chaperone ClpB | VFG2076 | Protein | 4e-113 | 41 |
