Gene Information

Name : rph (OCAR_4413)
Accession : YP_002287424.1
Strain : Oligotropha carboxidovorans OM5; ATCC 49405
Genome accession: NC_011386
Putative virulence/resistance : Unknown
Product : ribonuclease PH
Function : -
COG functional category : J : Translation, ribosomal structure and biogenesis
COG ID : COG0689
EC number : 2.7.7.56
Position : 396526 - 397242 bp
Length : 717 bp
Strand : -
Note : RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs

DNA sequence :
ATGCGTCCCAGCGGCCGCGCGCCCAACGAACTGCGCCCCGTCTCGCTCGAACGCGGCGTGGTGAAATACGCCGAAGGTTC
CTGCATGGTGAAATTCGGCGACACCCGCGTGCTCGTCACCGCGACGCTGGAGGAGCGGCTGCCGCCGTGGCTCAAGGGTC
AGGGCCGCGGCTGGGTCACTGCCGAATACGGCATGCTGCCCCGCGCCACCCATGAACGCGTCCGCCGCGAGGCCTCCGCC
GGCAAGCAGAGCGGCCGCACCGTGGAAATCCAGCGCCTGATCGGCCGCTCGCTGCGCACCACCGTCGATCTCGTGGCCCT
CGGCGAACGCCAGATCACCATCGACTGCGACGTGATCCAGGCTGATGGCGGCACCCGCACAGCGTCGATCACCGGCGCAT
GGGTTGCGCTCGCCGACTGCCTGCAATGGATGAAGGCACGCAACATGCTGAAAAACGACAACGTGCTGCGCGACAATGTC
GCCGCCATATCCTGCGGCATCTATAACGGCACGCCGGTACTCGATCTCGATTACGCCGAGGATTCAGAAGCCGAGACCGA
TGCGAACTTCGTCATGACCGGCGACGGCCGCCTCGTCGAGGTGCAGGGCACCGCCGAGCGCACGCCGTTCTCGCAGGAGG
AATTTCTGCAGCTGATGGCACTCGCGCAAAACGGCATCGGCCGTCTGGTCGAATTGCAAAAGATCGCGATGGCGTAA

Protein sequence :
MRPSGRAPNELRPVSLERGVVKYAEGSCMVKFGDTRVLVTATLEERLPPWLKGQGRGWVTAEYGMLPRATHERVRREASA
GKQSGRTVEIQRLIGRSLRTTVDLVALGERQITIDCDVIQADGGTRTASITGAWVALADCLQWMKARNMLKNDNVLRDNV
AAISCGIYNGTPVLDLDYAEDSEAETDANFVMTGDGRLVEVQGTAERTPFSQEEFLQLMALAQNGIGRLVELQKIAMA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
rph YP_001800860.1 ribonuclease PH Not tested Not named Protein 3e-51 51