Gene Information

Name : OCAR_6571 (OCAR_6571)
Accession : YP_002289548.1
Strain : Oligotropha carboxidovorans OM5; ATCC 49405
Genome accession: NC_011386
Putative virulence/resistance : Virulence
Product : transcriptional activator protein CopR
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 2516701 - 2517381 bp
Length : 681 bp
Strand : -
Note : -

DNA sequence : 
ATGCGCCTGCTGATTATCGAAGATGACCGCGAGTCGGCCGAATATCTCGCGAAAGCATTTCGCGAAGCCGGCCATGTCGC
CGAACTCGCCCGTGATGGCGAGGAAGGGCTCGCGCTCGCGCAGTCCGGTGGTTACGACGTGCTGGTGGTGGATCGCATGC
TGCCGAAGCGCGATGGCTTGTCGGTGATCGGCACGTTGCGCGAGACAGGCGATACTACGCCTGCGCTCATCCTCTCCGCG
CTCGGGCAGGTCGACGACCGCATCAAGGGCCTGCGCGCCGGGGGCGACGATTACCTGCCGAAACCCTATTCATTCGCCGA
ACTGCTCGCGCGCGTCGAGGTGCTGTCGCGCCGCCGCGGCGGGCCGTCGGAAGAAACGAGCTATCGCGTCGGCGATCTCG
AACTCGACCGGCTGTCGCATCAGGTGAAGCGCGGCGGCACTGAAATCACGCTGCAGCCGCGCGAGTTCCGGCTGCTCGAA
TATCTGATGAAGCATGCGGGCCAAGTGGTGACGCGCACCATGCTGCTCGAAAATGTGTGGGACTATCACTTCGATCCGCA
GACCAACGTGATCGACGTCCATATCTCGCGGCTGCGCTCGAAGATCGACAAGGGGCAGGAGGTGCCGCTCCTGCATACCA
TTCGCGGCGCCGGGTACATGATACGTGACGGCCTTCGGTAA

Protein sequence : 
MRLLIIEDDRESAEYLAKAFREAGHVAELARDGEEGLALAQSGGYDVLVVDRMLPKRDGLSVIGTLRETGDTTPALILSA
LGQVDDRIKGLRAGGDDYLPKPYSFAELLARVEVLSRRRGGPSEETSYRVGDLELDRLSHQVKRGGTEITLQPREFRLLE
YLMKHAGQVVTRTMLLENVWDYHFDPQTNVIDVHISRLRSKIDKGQEVPLLHTIRGAGYMIRDGLR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 3e-37 42
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 2e-36 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
OCAR_6571 YP_002289548.1 transcriptional activator protein CopR BAC0111 Protein 1e-53 48
OCAR_6571 YP_002289548.1 transcriptional activator protein CopR BAC0083 Protein 6e-47 47
OCAR_6571 YP_002289548.1 transcriptional activator protein CopR BAC0125 Protein 2e-47 46
OCAR_6571 YP_002289548.1 transcriptional activator protein CopR BAC0347 Protein 7e-46 45
OCAR_6571 YP_002289548.1 transcriptional activator protein CopR BAC0197 Protein 4e-43 45
OCAR_6571 YP_002289548.1 transcriptional activator protein CopR BAC0308 Protein 1e-43 44
OCAR_6571 YP_002289548.1 transcriptional activator protein CopR BAC0638 Protein 5e-39 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
OCAR_6571 YP_002289548.1 transcriptional activator protein CopR VFG1389 Protein 8e-36 44
OCAR_6571 YP_002289548.1 transcriptional activator protein CopR VFG1390 Protein 8e-42 43
OCAR_6571 YP_002289548.1 transcriptional activator protein CopR VFG0596 Protein 1e-37 42