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Name : smpB (UUR10_0065) Accession : YP_002284478.1 Strain : Ureaplasma urealyticum ATCC 33699 Genome accession: NC_011374 Putative virulence/resistance : Unknown Product : SsrA-binding protein Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0691 EC number : - Position : 80657 - 81082 bp Length : 426 bp Strand : + Note : binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Ca DNA sequence : ATGATAGTATCAAATAAACATGCGCGTCGAAATTATGAGTTGCTAGAATTTTTTGAGTGTGGAATTGTTTTAAAAGGAAC TGAAGTTAAATCAATTTCACGTGCTAATTGTTCAATTAATGAAGCCTATGTGCAAATAGTTAAAAATGAAGCTTTAATTT TAAATATGCACGTTGCTAGTTTTTTTGAAGGTAATAACTTTAATCAAGACCCTTATCGAAATCGTAAATTATTATTGCAT AAAAAAGAAATTATTAAGCTTCAACATTTAGTACAAACACAACGAATGACAATTGTACCAACTAAAATTTATTGAAAAAA TAATAAATTAAAAGTTGAAATTGCCTTGGCAAAAGGAAAACAACTTCATGATAAACGTGAAGATTTAAAAAAAAGAGACT TAGCGCGAGAATCGCGCTTATTTTAA Protein sequence : MIVSNKHARRNYELLEFFECGIVLKGTEVKSISRANCSINEAYVQIVKNEALILNMHVASFFEGNNFNQDPYRNRKLLLH KKEIIKLQHLVQTQRMTIVPTKIYWKNNKLKVEIALAKGKQLHDKREDLKKRDLARESRLF |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | AET14351.1 | SsrA-binding protein | Not tested | SaPI68111 | Protein | 6e-17 | 45 |
| smpB | YP_001800894.1 | SsrA-binding protein | Not tested | Not named | Protein | 7e-17 | 43 |
