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Name : lysS (Rleg2_3420) Accession : YP_002282913.1 Strain : Rhizobium leguminosarum WSM2304 Genome accession: NC_011369 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : - Position : 3536620 - 3538113 bp Length : 1494 bp Strand : + Note : class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA DNA sequence : ATGAACGACAAGACCGAAAACACCCTTTCCTCCGACGTGACTGAGGTGCGCGCCCAGAAGCTGAAGCTGCTGCGCGAGCA GGTCGGCGACGTCTATCCGGCGCATTTCCACCGGACGCTGACCAATGCCGAGCTCGGCGCCAAGTACGAATCTCTGGAAT CCGACGTCGAGACGCAGGATGTCGTCACCGTCGCCGGCCGCGTCTATTCCTCGCGCAACTCCGGCATGTTCATGGATATC CATGACGCTTCCGGCAAGATCCAGATCTTCAGCCACAAGGACACGACGCCGGAAGAGGCCCGCGCTTTGCTGCCGATGAT CGACATCGGCGACATCATCGGCGTGACCGGCATCGTGCGCCGCACCAAGCGCGGCGAGCTGACGATCAACGCCCAGAAGA TCGAGATGCTGACCAAGTCGCTGCTGCCGATGCCCGAGAAGTGGCACGGCCTCTCCGACATCGAGCTGCGGTATCGCAAG CGCCATCTCGACATCATGACCAACGAGGATTCGAAGCTTCGCTTCCAGCAGCGCTCGAAGATCGTCTCCGGCATCCGCCG CTTCATGGAGAATGACGGCTTCATGGAAGTCGAGACGCCGATGCTGCAATCGATCTATGGCGGCGCCACCGCCGAGCCGT TCAAGACGCATCACAACACGCTGAAGCTCGACATGTATCTGCGCATCGCGCCGGAACTGTTCCTGAAGCGCACGCTGGTA TCGGGCCTCACCGACAAGGTCTTCGAGATCAACCGGAACTTCCGCAACGAAGGCGTCTCCACCCGGCACAATCCCGAGTT CACGATGATGGAGTGTTACTGGGCCTATGCCGATTACGAGGACATGATGGACCTCGTCGAGCGGCTGTTCGAAACCCTGG CGCTCTCCATCCATGGCACCACCGAATTCGATTTCGGCGACAAGCAGCTGTCCTTCAAGGGTCCGTTCAAGCGCGTACCG ATGCCTGACGCCGTCAAGCAAGTGACCGGCATCGATTTCCTTGCGATCAAGACCGACGAGGAAGCACGCACTGCTGCCAA GGCTGCCGGCTTCGCGGTCGAGAAGGACTGGACCTGGGGCGAATGCCTTGCCTTCATCTTCGAGGAAAAGGTTGAATCCA CACTGATCCAGCCGTCTCACGTCACGCATTTCCCGAAGGACATCTCACCCTTCGCCAAGGAAGTGCCGGGCGAACCGCGC CTCGTCGAGCGCTTCGAGACCTATTGCAACGCCTGGGAACTCGGCAACGCCTTCTCCGAGCTCAACGATCCCGAAGAGCA GCGCCGCCGCATGGTCGAGCAGCTCGAACAGGCGCATGCCCGCGGCGAAAAGGAAAAGCAGTTGGACGAGGAATTCCTCG ACGCGATCGACCAGGGCATGCCGCCGGCCGGCGGCCTCGGCATCGGCGTCGACCGCCTGATCATGCTTTTGACCAACGCC CCGTCGATCCGCGACGTCATCCTCTTCCCGGCCCGCCGCAACAAGGCCGACTGA Protein sequence : MNDKTENTLSSDVTEVRAQKLKLLREQVGDVYPAHFHRTLTNAELGAKYESLESDVETQDVVTVAGRVYSSRNSGMFMDI HDASGKIQIFSHKDTTPEEARALLPMIDIGDIIGVTGIVRRTKRGELTINAQKIEMLTKSLLPMPEKWHGLSDIELRYRK RHLDIMTNEDSKLRFQQRSKIVSGIRRFMENDGFMEVETPMLQSIYGGATAEPFKTHHNTLKLDMYLRIAPELFLKRTLV SGLTDKVFEINRNFRNEGVSTRHNPEFTMMECYWAYADYEDMMDLVERLFETLALSIHGTTEFDFGDKQLSFKGPFKRVP MPDAVKQVTGIDFLAIKTDEEARTAAKAAGFAVEKDWTWGECLAFIFEEKVESTLIQPSHVTHFPKDISPFAKEVPGEPR LVERFETYCNAWELGNAFSELNDPEEQRRRMVEQLEQAHARGEKEKQLDEEFLDAIDQGMPPAGGLGIGVDRLIMLLTNA PSIRDVILFPARRNKAD |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 3e-98 | 48 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_002282913.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 2e-98 | 48 |
