Gene Information

Name : Gdia_0660 (Gdia_0660)
Accession : YP_002275066.1
Strain : Gluconacetobacter diazotrophicus PAl 5
Genome accession: NC_011365
Putative virulence/resistance : Virulence
Product : ABC transporter-like protein
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG1134
EC number : -
Position : 751520 - 752167 bp
Length : 648 bp
Strand : -
Note : PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gdi:GDI2409 capsule polysaccharide export ATP-binding protein CtrD

DNA sequence : 
ATGATTCGTTGTATCGACCTTGTGAAAGAGTATCACGTACCCGGTGGACGCCGGCGTGTACTGGACCATGTAAATTTTCA
GCTTGATCGCGGGCGGCGGCTTGGTGTTCTAGGCCGAAATGGTGCTGGGAAATCGACGCTTATCCGTATCATCGGGGGAG
TGGAATTTGCGACATCTGGACGTATTGAGCGCACAATGTCTGTGTCCTGGCCCCTGGCATTTGGTGGTGCGTTTCAGGGA
AGTCTAAGTGGTCTAGACAACCTTCGCTTTATTTGCAGGATCTATAATCTCGATTACCCGTCTACCCGAGCATTCGTGGA
TGATTTTGCCGAACTCGGGCGGCAATTGGGGGAACCTGTCAAGACCTACTCATCAGGAATGCGTGCGCGCCTTGCATTTG
CGCTATCGATTATCATCGAATTTGAATGCTATCTTATCGACGAAGTTATCATGGTCGGAGATGCACGTTTTTTGGCGCGA
TGCCAAGACGAATTGTTTGGGAAACGTCAGGACAGGGCGCTCATTATCGTTTCTCACGACATGGGTTTTATCCGTGAACA
TTGTGATCAGGCGGCTATCATCCATGGGGGTAAATTTGTACCTTATGGTAGTGTCCATGATGCGATCGAAAGTTACGATA
AGTTATAA

Protein sequence : 
MIRCIDLVKEYHVPGGRRRVLDHVNFQLDRGRRLGVLGRNGAGKSTLIRIIGGVEFATSGRIERTMSVSWPLAFGGAFQG
SLSGLDNLRFICRIYNLDYPSTRAFVDDFAELGRQLGEPVKTYSSGMRARLAFALSIIIEFECYLIDEVIMVGDARFLAR
CQDELFGKRQDRALIIVSHDMGFIREHCDQAAIIHGGKFVPYGSVHDAIESYDKL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ctrD NP_273138.1 capsule polysaccharide export ATP-binding protein CtrD Not tested IHT-A Protein 3e-51 56
kpsT YP_854396.1 polysialic acid transport ATP-binding protein KpsT Not tested PAI I APEC-O1 Protein 5e-36 44
kpsT CAE85223.1 KpsT protein Virulence PAI V 536 Protein 2e-36 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Gdia_0660 YP_002275066.1 ABC transporter-like protein VFG2563 Protein 9e-54 57
Gdia_0660 YP_002275066.1 ABC transporter-like protein VFG0258 Protein 1e-51 56
Gdia_0660 YP_002275066.1 ABC transporter-like protein VFG0696 Protein 2e-51 56
Gdia_0660 YP_002275066.1 ABC transporter-like protein VFG1449 Protein 2e-36 44