Gene Information

Name : fliP (Gdia_3463)
Accession : YP_002277803.1
Strain : Gluconacetobacter diazotrophicus PAl 5
Genome accession: NC_011365
Putative virulence/resistance : Virulence
Product : flagellar biosynthesis protein FliP
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : 3.1.1.3
Position : 3795618 - 3796418 bp
Length : 801 bp
Strand : +
Note : FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus

DNA sequence : 
GTGAATACCGGAGCGAACGCGTTGACATCTCGGTCATCCACGGGGCGTGCCGCCAGGTTCGGTGCCGTCGTCATGTGCGT
CGTAGCGGGTGCCGTGCTGGCTGGCATGCCGACATTGGCCCACGCCCAGTCCCTGTCGCTGGATCTGGGGAAGGGGATGG
GTGACGCGGGAACGACCAGCCGCCTCGTCCAGTTGACGGCGCTGATCACGATTCTCTCGCTTGCGCCCAGCCTGCTGGTG
ATGGTGACCGCCTTCACGCGGATCATCGTCGTGCTGTCCCTGTTGCGTGGTGCGATCGGGGCGCAGGGGGCCCCTCCCAA
CACGGTACTGATCGGCCTGGCGCTGTTCCTGACCTTCTTCGTCATGCAGCCTGTTTTCCAACAATCATGGGATCATGGCA
TCGTCCCCATGATGGATGGCCGCGTCAGTGAAATGGAAGGCCTGACGGCCGCGGCAGAGCCGTTCCGGACGTTCATGCTG
GCGAACGCGCGGCCGGCCGACATCACGACGTTTCTGCATCTCGCAAACGTGCCGCCGCCGGCGACGCCTGCCGAGACGCC
GTGGCGGGTGATCATGCCGGCCTTCATGATCGGCGAACTCAGCCGCGGTTTCGAGATGGGATTCCTGCTCTACCTGCCGT
TCCTGGTCATCGACATCGTCACGTCGAGCGTCCTCATGAGTCTCGGCATGATGATGCTCCCGCCTGCCACGATCTCCCTG
CCGTTCAAGCTGATCTTCTTCGTCATGGTGGATGGGTGGCAGATGGTGGCGGGGGGATTGGTCAGAAGCTTCGGGGGCTG
A

Protein sequence : 
MNTGANALTSRSSTGRAARFGAVVMCVVAGAVLAGMPTLAHAQSLSLDLGKGMGDAGTTSRLVQLTALITILSLAPSLLV
MVTAFTRIIVVLSLLRGAIGAQGAPPNTVLIGLALFLTFFVMQPVFQQSWDHGIVPMMDGRVSEMEGLTAAAEPFRTFML
ANARPADITTFLHLANVPPPATPAETPWRVIMPAFMIGELSRGFEMGFLLYLPFLVIDIVTSSVLMSLGMMMLPPATISL
PFKLIFFVMVDGWQMVAGGLVRSFGG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscR AAO18040.1 LscR Virulence TTSS locus Protein 8e-27 43
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 2e-27 42
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 3e-22 41
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 3e-22 41
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 3e-22 41
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 1e-26 41
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 1e-26 41
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 1e-27 41
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 1e-27 41
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 1e-27 41
hrcR AAB06005.2 HrcR Virulence Hrp PAI Protein 6e-23 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fliP YP_002277803.1 flagellar biosynthesis protein FliP VFG2338 Protein 2e-45 48
fliP YP_002277803.1 flagellar biosynthesis protein FliP VFG2494 Protein 2e-44 48
fliP YP_002277803.1 flagellar biosynthesis protein FliP VFG2016 Protein 5e-41 47
fliP YP_002277803.1 flagellar biosynthesis protein FliP VFG1259 Protein 7e-42 45
fliP YP_002277803.1 flagellar biosynthesis protein FliP VFG0044 Protein 7e-27 42
fliP YP_002277803.1 flagellar biosynthesis protein FliP VFG0188 Protein 4e-26 41