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Name : ECH74115_5161 (ECH74115_5161) Accession : YP_002273255.1 Strain : Escherichia coli EC4115 Genome accession: NC_011353 Putative virulence/resistance : Virulence Product : fimbrial usher protein Function : - COG functional category : N : Cell motility COG ID : COG3188 EC number : - Position : 4803732 - 4806266 bp Length : 2535 bp Strand : - Note : identified by match to protein family HMM PF00577 DNA sequence : ATGGCCTCTTCGCATCTTTTCATTACGCTTGCATCGGGCATATGTCTGCTCTGTTCCATATCTGCTTTTGCCCGGGATAG CTTGTTCAACCCCAGATTACTGGAACTGGATCATCCTGCGGATAATATTGATATTCACCAGTTCAACCGTTCGAATACCT TACCTGCGGGAACATACAAAGTTGATGTGATGATCAACGGCATGCTCTTCGAACGCCAGGAAGTTAAATTCGCCCAGGAT AACCCTGATGCTGAACTCCACCCATGCTACGTGGCGATAAAAAACGTGCTGGCGACCTATGGTATAAAAGTTGATGCGAT AAAATCTCTGGCGAATGTTGATGACAAAACATGCGTAAATCCAGTTCCGCTGATCGACGGGGCTACCTGGTTACTGGACG CCAGTAAACTTGCATTGAATATTACTATTCCGCAAATTTATCTCAACAATGCAGTTAATGGTTATATCAGCCCTTCCCGT TGGGATCAGGGGATCAATGCCATGATGATGAATTATGATTTTTCGGCATCGCATACCATCCGGTCAAATTATGACGACGA CGATGACAGTTATTATCTGAATTTGCGTAATGGTATTAATTTAGGCGCATGGCGTTTTCGTAATTACAGCACCCTGAATT CTTATGACGGTAATGTGGACTACCATTCCGTCAGTAATTACATTCAGCGCGACATCATGGCATTACGTAGCCAGATTATG ATTGGCGATACCTGGACGGCAAGCGATGTATTTGATAGTACACAGGTGCGTGGCGTGCGGCTGTATACCGATGACGATAT GTTGCCCTCCAGCCAGAACGGCTTTGCGCCAGTGGTACATGGGATTGCGAAAACTAACGCCACGGTGATCATCAAACAAA ACGGCTACGTTATTTATCAATCAGCCGTACCACAGGGCGCATTTGCCCTCACCGACTTAAACACGACCAGTAGCGGCGGC GATCTCGATGTCACTATCAAAGAAGAAGATGGCAGCGAGCAGCACTTTATTCAGCCATTTACTTCACTGGCCATTCTCAA GCGTGAAGGTCAGACCGATGTAGACCTTAGCATTGGAGAAGTGCGCGACGAAAGCGGCTTTACGCCTGAGGTCTTGCAGT TACAAGCAATGCACGGTTTCCCTTTGGGAATAACTTTGTATGGCGGAACACAATTGGCAAATGATTACGCTTCTGCCGCG CTGGGTATTGGTAAAGATATGGGGGCGCTGGGCGCGATTTCTTTTGACGTGACTCATGCCCGCTCGCAGTTTGACTACGA CGATAATGAGAGTGGTCAATCGTATCGTTTTCTCTATTCCAAACGTTTTGAAGACACCAATACCACCTTTCGTCTGGTGG GTTATCGCTACTCTATGGAGGGGTTCTACACCCTCAATGAATGGGTGTCGCGACAGGATAATGATTCTGATTTCTGGGTA ACGGGCAACCGTCGCAGCCGCTTCGAAGGTACCTGGACGCAATCTTTCACGCCAGGCTGGGGCAATATTTATTTAACATT CAGTCGACAGGAATACTGGCAGACCGATGAGGTCGAACGTTTATTACAGTTCGGCTATAACAACAACTGGCGAAACATCT CCTGGAACGTTTCCTGGAACTATACGGACTCGATCAAGCGCTCATTGGGCAACCATCATGATGATAACAATGATGATTTC GGCAAAGAACAGATTTTCATGTTCTCAATGTCGATACCGCTATCGTGCTGGATGGAAGACAGCTACGTCAACTATTCGTT AACGCAAAACAACCACCATGAAAGCACGATGCAGGTCGGTCTGAACGGAACGATGCTGGAAGGGCGTAACCTGTCTTATA ACGTACAGGAATCGTGGATGCACTCTCCTGATGACTCCTACAGCGGCAATGCCGGAATGACCTATGACGGGACTTATGGC TCGGTCAATGGTAGCTATTCCTGGAGCCGTGACTCCCAACATTTTGATTATGGCGCCAGAGGCGGCGTGCTGGTGCATAG TGACGGAGTGACCTTCTCGCAGGAACTGGGCGAAACGGTGGCATTGGTCAAAGCGCCGGGCGCAGAAGGCCTGTCCATTG AAAACGCCACCGGGATTTCTACCGACTGGCGTGGTTATACCGTAAAAACGCAGCTTAGCCCGTATGACGAAAACCGCGTG GCATTGAACAGCGACTATTTCTCCAAAGCCAATATTGAACTGGAAAACACCGTCATCAACCTGGTACCAACGCGCGGTGC GGTGGTGAAAGCCGAATTTGTCACCCATGTCGGTTATCGCGTGCTATTTAACGTCCGCCAGGTCAACGGTAAACCAATAA TGTTTGGCGCGATGGCAACCGCCTCTCTCGAAACGGGCACAGTCACCGGGATTGTCGGTGATAACGGCGAACTGTATCTC TCCGGGATGCCTGAAAAAGGCGAGTTTTTATTGAGTTGGGGACAAGCTGCGGATGAAAAATGTAAGGCGGCCTATCACAT CACCCATAAACCTGATGATACCAGCCTGGTTCAAATGGATGCGATTTGTCGCTAA Protein sequence : MASSHLFITLASGICLLCSISAFARDSLFNPRLLELDHPADNIDIHQFNRSNTLPAGTYKVDVMINGMLFERQEVKFAQD NPDAELHPCYVAIKNVLATYGIKVDAIKSLANVDDKTCVNPVPLIDGATWLLDASKLALNITIPQIYLNNAVNGYISPSR WDQGINAMMMNYDFSASHTIRSNYDDDDDSYYLNLRNGINLGAWRFRNYSTLNSYDGNVDYHSVSNYIQRDIMALRSQIM IGDTWTASDVFDSTQVRGVRLYTDDDMLPSSQNGFAPVVHGIAKTNATVIIKQNGYVIYQSAVPQGAFALTDLNTTSSGG DLDVTIKEEDGSEQHFIQPFTSLAILKREGQTDVDLSIGEVRDESGFTPEVLQLQAMHGFPLGITLYGGTQLANDYASAA LGIGKDMGALGAISFDVTHARSQFDYDDNESGQSYRFLYSKRFEDTNTTFRLVGYRYSMEGFYTLNEWVSRQDNDSDFWV TGNRRSRFEGTWTQSFTPGWGNIYLTFSRQEYWQTDEVERLLQFGYNNNWRNISWNVSWNYTDSIKRSLGNHHDDNNDDF GKEQIFMFSMSIPLSCWMEDSYVNYSLTQNNHHESTMQVGLNGTMLEGRNLSYNVQESWMHSPDDSYSGNAGMTYDGTYG SVNGSYSWSRDSQHFDYGARGGVLVHSDGVTFSQELGETVALVKAPGAEGLSIENATGISTDWRGYTVKTQLSPYDENRV ALNSDYFSKANIELENTVINLVPTRGAVVKAEFVTHVGYRVLFNVRQVNGKPIMFGAMATASLETGTVTGIVGDNGELYL SGMPEKGEFLLSWGQAADEKCKAAYHITHKPDDTSLVQMDAICR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| lpfC | YP_006098365.1 | fimbrial outer membrane usher protein | Not tested | Tn2411 | Protein | 0.0 | 64 |
| lpfC | NP_839216.1 | long polar fimbriae | Not tested | SHI-2 | Protein | 0.0 | 63 |
| lpfC | NP_709462.1 | long polar fimbriae | Not tested | SHI-2 | Protein | 0.0 | 63 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| ECH74115_5161 | YP_002273255.1 | fimbrial usher protein | VFG0454 | Protein | 1e-142 | 41 |
