Gene Information

Name : epaR (ECH74115_5073)
Accession : YP_002273177.1
Strain : Escherichia coli EC4115
Genome accession: NC_011353
Putative virulence/resistance : Virulence
Product : type III secretion apparatus protein SpaR/YscT/HrcT
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4791
EC number : -
Position : 4719391 - 4720167 bp
Length : 777 bp
Strand : -
Note : identified by match to protein family HMM PF01311; match to protein family HMM TIGR01401

DNA sequence : 
ATGAATGAGATAATGACGGTCATAGTATCATCATTTTATTGTATACTCAGGCCGCTGGGGATGTTTATTATCCTACCAAT
ATTTTCAACAGGTGTTTTACTCAGTAACTTTATTCGCAACTCAATTATGATTGCGTTTACGCTTCCGATCATAGTAGAGA
ACTATACATTTTCGGAAAAATTGCCATCTGGAATCTTTCAGTTGACAGGAATAGCGCTAAAAGAAATAAGTATTGGTTTT
TTCATTGGGTTATCATTTACTATTCTTTTTTGGGCAATAGATGCGGCTGGACAGATTATTGATACTCTAAGAGGCTCAAC
AATATCTTCAATTTTTAACCCGTCCATAAGTGATTCATCTTCTATCACTGGCGTTATCTTGTACCAATTTATCTCTGTGA
TCTTTGTTATTCATGGTGGGATACAAAGCATCCTAGATAAGCTATATTTATCCTACGAGATATTACCATTACAAGCCGAT
ATTGCATTCAATCGTGCTTTAATAGATTTTTTGTTTTCTCTATGGGATTCATTTATTAAACTGATGTTATCATTTTCAGT
TCCCATGATTATCGGTATATTCTTATGTGATATGGGGTTTGGGTTTCTTAACAAAACAGCACCTCAGCTAAACGTATTCA
CATTATCACTGCCAGTAAAAAGTTTGATAGCAATCTTTATATTGCTATTAGTTATTCATGTTTTTCCTGATTTTATTACG
GCAAATATTCATTCTGACATAATTGATAGATCGTTACCGAGCATGATTAATGAGTGA

Protein sequence : 
MNEIMTVIVSSFYCILRPLGMFIILPIFSTGVLLSNFIRNSIMIAFTLPIIVENYTFSEKLPSGIFQLTGIALKEISIGF
FIGLSFTILFWAIDAAGQIIDTLRGSTISSIFNPSISDSSSITGVILYQFISVIFVIHGGIQSILDKLYLSYEILPLQAD
IAFNRALIDFLFSLWDSFIKLMLSFSVPMIIGIFLCDMGFGFLNKTAPQLNVFTLSLPVKSLIAIFILLLVIHVFPDFIT
ANIHSDIIDRSLPSMINE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
escT NP_290281.1 hypothetical protein Virulence LEE Protein 2e-107 100
ECs4581 NP_312608.1 EscT Virulence LEE Protein 2e-107 100
escT AAC31526.1 L0047 Virulence LEE Protein 1e-107 100
escT ACU09471.1 type III secretion apparatus protein SpaR/YscT/HrcT Virulence LEE Protein 1e-107 100
escT YP_003236101.1 putative T3SS structure protein EscT Virulence LEE Protein 2e-107 100
escT AAC38371.1 EscT Virulence LEE Protein 4e-107 99
escT CAI43887.1 EscT protein Virulence LEE Protein 2e-106 98
escT AAK26702.1 EscT Virulence LEE Protein 2e-106 98
escT YP_003223488.1 T3SS structure protein EscT Virulence LEE Protein 2e-106 98
escT AAL57529.1 EscT Virulence LEE Protein 2e-106 98
escT YP_003232140.1 T3SS structure protein EscT Virulence LEE Protein 2e-106 98
escT CAC81849.1 EscT protein Virulence LEE II Protein 2e-106 98
unnamed AAL06356.1 EscT Virulence LEE Protein 5e-103 92
escT AFO66312.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 9e-80 70
escT AFO66402.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 9e-80 70

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
epaR YP_002273177.1 type III secretion apparatus protein SpaR/YscT/HrcT VFG0825 Protein 8e-108 100
epaR YP_002273177.1 type III secretion apparatus protein SpaR/YscT/HrcT VFG0717 Protein 2e-107 99