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Name : ECH74115_5056 (ECH74115_5056) Accession : YP_002273160.1 Strain : Escherichia coli EC4115 Genome accession: NC_011353 Putative virulence/resistance : Virulence Product : Tir Function : - COG functional category : - COG ID : - EC number : - Position : 4703034 - 4704710 bp Length : 1677 bp Strand : - Note : identified by match to protein family HMM PF03549; match to protein family HMM PF07489; match to protein family HMM PF07490 DNA sequence : ATGCCTATTGGTAATCTTGGTCATAATCCCAATGTGAATAATTCAATTCCTCCTGCACCTCCATTACCTTCACAAACCGA CGGTGCAGGGGGGCGTGGTCAGCTCATTAACTCTACGGGGCCGTTGGGATCTCGTGCGCTATTTACGCCTGTAAGGAATT CTATGGCTGATTCTGGCGACAATCGTGCCAGTGATGTTCCTGGACTTCCTGTAAATCCGATGCGCCTGGCGGCGTCTGAG ATAACACTGAATGATGGATTTGAAGTTCTTCATGATCATGGTCCGCTCGATACTCTTAACAGGCAGATTGGCTCTTCGGT ATTTCGAGTTGAAACTCAGGAAGATGGTAAACATATTGCTGTCGGTCAGAGGAATGGTGTTGAGACCTCTGTTGTTTTAA GTGATCAAGAGTACGCTCGCTTGCAGTCCATTGATCCTGAAGGTAAAGACAAATTTGTATTTACTGGAGGCCGTGGTGGT GCTGGGCATGCTATGGTCACCGTTGCTTCAGATATCACGGAAGCCCGCCAAAGGATACTGGAGCTGTTAGAGCCCAAAGG GACCGGGGAGTCCAAAGGTGCTGGGGAGTCAAAAGGCGTTGGGGAGTTGAGGGAGTCAAATAGCGGTGCGGAAAACACCA CAGAAACTCAGACCTCAACCTCAACTTCCAGCCTTCGTTCAGATCCTAAACTTTGGTTGGCGTTGGGGACTGTTGCTACA GGTCTGATAGGGTTGGCGGCGACGGGTATTGTACAGGCGCTTGCATTGACGCCGGAGCCGGATAGCCCAACCACGACCGA CCCTGATGCAGCTGCAAGTGCAACTGAAACTGCGACAAGAGATCAGTTAACGAAAGAAGCGTTCCAGAACCCAGATAATC AAAAAGTTAATATCGATGAGCTCGGAAATGCGATTCCGTCAGGGGTATTGAAAGATGATGTTGTTGCGAATATAGAAGAG CAGGCTAAAGCAGCAGGCGAAGAGGCCAAACAGCAAGCCATTGAAAATAATGCTCAGGCGCAAAAAAAATATGATGAACA ACAAGCTAAACGCCAGGAGGAGCTGAAAGTTTCATCGGGGGCTGGCTACGGTCTTAGTGGCGCATTGATTCTTGGTGGGG GAATTGGTGTTGCCGTCACCGCTGCGCTTCATCGAAAAAATCAGCCGGTAGAACAAACAACAACAACAACTACTACAACT ACAACTACAAGCGCACGTACGGTAGAGAATAAGCCTGCAAATAATACACCTGCACAGGGCAATGTAGATACCCCTGGGTC AGAAGATACCATGGAGAGCAGACGTAGCTCGATGGCTAGCACCTCGTCGACTTTCTTTGACACTTCCAGCATAGGGACCG TGCAGAATCCGTATGCTGATGTTAAAACATCGCTGCATGATTCGCAGGTGCCGACTTCTAATTCTAATACGTCTGTTCAG AATATGGGGAATACAGATTCTGTTGTATATAGCACCATTCAACATCCTCCCCGGGATACTACTGATAACGGCGCACGGTT ATTAGGAAATCCAAGTGCGGGGATTCAAAGCACTTATGCGCGTCTGGCGCTAAGTGGTGGATTACGCCATGACATGGGAG GATTAACGGGGGGGAGTAATAGCGCTGTGAATACTTCGAATAACCCACCAGCGCCGGGATCCCATCGTTTCGTCTAA Protein sequence : MPIGNLGHNPNVNNSIPPAPPLPSQTDGAGGRGQLINSTGPLGSRALFTPVRNSMADSGDNRASDVPGLPVNPMRLAASE ITLNDGFEVLHDHGPLDTLNRQIGSSVFRVETQEDGKHIAVGQRNGVETSVVLSDQEYARLQSIDPEGKDKFVFTGGRGG AGHAMVTVASDITEARQRILELLEPKGTGESKGAGESKGVGELRESNSGAENTTETQTSTSTSSLRSDPKLWLALGTVAT GLIGLAATGIVQALALTPEPDSPTTTDPDAAASATETATRDQLTKEAFQNPDNQKVNIDELGNAIPSGVLKDDVVANIEE QAKAAGEEAKQQAIENNAQAQKKYDEQQAKRQEELKVSSGAGYGLSGALILGGGIGVAVTAALHRKNQPVEQTTTTTTTT TTTSARTVENKPANNTPAQGNVDTPGSEDTMESRRSSMASTSSTFFDTSSIGTVQNPYADVKTSLHDSQVPTSNSNTSVQ NMGNTDSVVYSTIQHPPRDTTDNGARLLGNPSAGIQSTYARLALSGGLRHDMGGLTGGSNSAVNTSNNPPAPGSHRFV |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| tir | AAC31506.1 | L0027 | Virulence | LEE | Protein | 0.0 | 100 |
| tir | AAY25392.1 | translocated intimin receptor | Virulence | LEE | Protein | 0.0 | 100 |
| tir | ACU09451.1 | translocated intimin receptor protein Tir | Virulence | LEE | Protein | 0.0 | 100 |
| tir | NP_290261.1 | translocated intimin receptor protein | Not tested | LEE | Protein | 0.0 | 100 |
| ECs4561 | NP_312588.1 | hypothetical protein | Virulence | LEE | Protein | 0.0 | 100 |
| tir | AAY25390.1 | translocated intimin receptor | Virulence | LEE | Protein | 0.0 | 99 |
| tir | AAY25391.1 | translocated intimin receptor | Virulence | LEE | Protein | 0.0 | 99 |
| tir | YP_003223468.1 | translocated intimin receptor Tir | Virulence | LEE | Protein | 3e-113 | 66 |
| tir | CAI43867.1 | translocated intimin receptor | Not tested | LEE | Protein | 2e-113 | 66 |
| tir | YP_003232160.1 | translocated intimin receptor Tir | Virulence | LEE | Protein | 2e-115 | 66 |
| tir | AAK26722.1 | Tir | Virulence | LEE | Protein | 5e-115 | 66 |
| tir | AAL57549.1 | Tir | Virulence | LEE | Protein | 5e-115 | 66 |
| espE | CAC81869.1 | EspE protein | Virulence | LEE II | Protein | 2e-115 | 66 |
| tir | AAC38390.1 | Tir | Virulence | LEE | Protein | 1e-85 | 60 |
| tir | YP_003236081.1 | putative translocated intimin receptor Tir | Not tested | LEE | Protein | 8e-82 | 60 |
| tir | AAY25393.1 | translocated intimin receptor | Virulence | LEE | Protein | 3e-81 | 60 |
| tir | AAY25395.1 | translocated intimin receptor | Virulence | LEE | Protein | 3e-81 | 60 |
| tir | AAY25394.1 | translocated intimin receptor | Virulence | LEE | Protein | 7e-82 | 60 |
| unnamed | AAL06376.1 | translocated intimin receptor Tir | Virulence | LEE | Protein | 3e-79 | 58 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| ECH74115_5056 | YP_002273160.1 | Tir | VFG0805 | Protein | 0.0 | 100 |
| ECH74115_5056 | YP_002273160.1 | Tir | VFG0737 | Protein | 7e-86 | 60 |
