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Name : ECH74115_5053 (ECH74115_5053) Accession : YP_002273157.1 Strain : Escherichia coli EC4115 Genome accession: NC_011353 Putative virulence/resistance : Virulence Product : type III secretion apparatus protein, YscD/HrpQ family Function : - COG functional category : - COG ID : - EC number : - Position : 4698078 - 4699298 bp Length : 1221 bp Strand : + Note : identified by match to protein family HMM TIGR02500 DNA sequence : ATGTTATCCTCATATAAAATAAAACTTCTCAATGGTGCGATGCGTAATCGGGAATTACAACTTCCGATGGGAAACCTAAC GCTAGGTACGGAAGATAACGATATTGTTTACTTTCCCCTTGAACAAGGCCTCAATCAGTTTTTACTTGATATACGTGAGG AAGGTGTTTTCCTTTTATCTCCGGTTGAATTTTGGATTGATGGGCAACCCACGCCCTATGAAGCAGATAAACCATTACCT GTCGGAAAGGTTATTGATATAGCGGGATGTTGCTTCATCATTGGTGATATTGACCATTCCTTGCCATTGTCTGATGTGCC AGAAAGGTTCTCTGCCAAAAGTCGACGCAAAAAACGCCTTATCCTGGCGAGCGTGATTGGTGCTACTTTTGCGTTGTCTG GTGCCATCGGCAGTTACGTTTTGCTTTCCCCAAAAGCTGAACCCCCAACGTTTACCAGAGCTGATGTATATCAGCAGCTA AAAGAAAACAAACTTCATGCAATCACTCTGGTATGGCATGGGAAAAATATCGCGCTTTATGGGCGTTGCGAATCAACCAC GGATTTAACTCCATTTTTTAATTACCTAAAAGAAAAAAATATTTTTTATTACAATAATATCATTTGCAATAACCAAATCA TATCCGCAATTAATGATGTCTTAACGGAATACGGTTACAAAGATATCATTATTACAAAAGGTAATAAGCCTGGATTCTTT CTGTTATCGGGATACATTCCCCCTTCACCCAAATGGAGCGAGGTTGAAAATCTGTTACTGAATACGCCAGGAGTTGCAGG ATGGGAAATACACAACAACAGTAACAATAAAATCAATGAACTGGCATCAGAGTTTAAAAAGAATAAACTAATAAACTATG TCAATATTTTCAAAAAGAATGATGTCATCATTGTTGCGGGGGAAGTTTCTCAACAGAATGAGAGTAAGATCCTTGCCATT ATAAATGCAATGAACAAAAATAGTAACGCCAAGATACTCTTTCAGAACATTCAGCCGTACATTTCAGCAGATATTTTCCC CGGAAAAATACTCAGAATCAGCGGTACGATGAAGAATCCAACAATTGCTCTTGATAATGGCACCAGCCTGGGGATTGGTA GCATTCTGAAAGGAGGCTATGTCATAGACGCGATTGATCCTAAAGATGGTATCAACATCTCCCGCCCAGACGAATATATA CATATTCCACTGTCGTATTAA Protein sequence : MLSSYKIKLLNGAMRNRELQLPMGNLTLGTEDNDIVYFPLEQGLNQFLLDIREEGVFLLSPVEFWIDGQPTPYEADKPLP VGKVIDIAGCCFIIGDIDHSLPLSDVPERFSAKSRRKKRLILASVIGATFALSGAIGSYVLLSPKAEPPTFTRADVYQQL KENKLHAITLVWHGKNIALYGRCESTTDLTPFFNYLKEKNIFYYNNIICNNQIISAINDVLTEYGYKDIIITKGNKPGFF LLSGYIPPSPKWSEVENLLLNTPGVAGWEIHNNSNNKINELASEFKKNKLINYVNIFKKNDVIIVAGEVSQQNESKILAI INAMNKNSNAKILFQNIQPYISADIFPGKILRISGTMKNPTIALDNGTSLGIGSILKGGYVIDAIDPKDGINISRPDEYI HIPLSY |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| ECs4558 | NP_312585.1 | EscD | Virulence | LEE | Protein | 4e-177 | 100 |
| escD | AAC31503.1 | L0024 | Virulence | LEE | Protein | 3e-177 | 100 |
| unnamed | ACU09448.1 | type III secretion apparatus protein YscD/HrpQ family | Virulence | LEE | Protein | 3e-177 | 100 |
| escD | NP_290258.1 | hypothetical protein | Virulence | LEE | Protein | 4e-177 | 100 |
| escD | CAI43864.1 | EscD protein | Virulence | LEE | Protein | 1e-174 | 98 |
| unnamed | AAC38402.1 | EscD | Virulence | LEE | Protein | 8e-173 | 98 |
| escD | AAK26725.1 | EscD | Virulence | LEE | Protein | 1e-174 | 98 |
| escD | YP_003223465.1 | T3SS structure protein EscD | Virulence | LEE | Protein | 2e-174 | 98 |
| escD | AAL57552.1 | EscD | Virulence | LEE | Protein | 1e-174 | 98 |
| escD | YP_003232163.1 | T3SS structure protein EscD | Virulence | LEE | Protein | 2e-174 | 98 |
| escD | CAC81872.1 | EscD protein | Virulence | LEE II | Protein | 1e-174 | 98 |
| escD | YP_003236078.1 | T3SS structure protein EscD | Virulence | LEE | Protein | 7e-170 | 96 |
| unnamed | AAL06379.1 | EscD | Virulence | LEE | Protein | 3e-166 | 93 |
| escD | AFO66302.1 | putative LEE-encoded type III secretion system component | Virulence | SESS LEE | Protein | 8e-117 | 59 |
| escD | AFO66391.1 | putative LEE-encoded type III secretion system component | Virulence | SESS LEE | Protein | 2e-116 | 58 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| ECH74115_5053 | YP_002273157.1 | type III secretion apparatus protein, YscD/HrpQ family | VFG0802 | Protein | 2e-177 | 100 |
| ECH74115_5053 | YP_002273157.1 | type III secretion apparatus protein, YscD/HrpQ family | VFG0740 | Protein | 5e-173 | 98 |
