Gene Information

Name : ECH74115_4921 (ECH74115_4921)
Accession : YP_002273031.1
Strain : Escherichia coli EC4115
Genome accession: NC_011353
Putative virulence/resistance : Virulence
Product : chaperone protein FimC
Function : -
COG functional category : N : Cell motility
COG ID : COG3121
EC number : -
Position : 4559865 - 4560554 bp
Length : 690 bp
Strand : -
Note : identified by match to protein family HMM PF00345; match to protein family HMM PF02753

DNA sequence : 
ATGATGAAAAGTAAATTTGTTGCGTTGGCTCTCTCTCTGTTCCTTTCACAGTCAGTTCTGGCGGGTGGCGTCGGACTTAG
CTCTACTCGCGTAATTTATGATGGCAGTAAGAAAGAAGCCTCGCTGACCGTACAGAATAAAAGTAAGACGGAAGAGTTTC
TTATCCAATCCTGGGTGGATGATGCCGCGGGCAGCAAAAAAACACCGTTTATTATTACGCCCCCACTATTCAAGCTTGAT
CCAGAAAAGAACAATATTTTGCGTATTGTGAATATTACGCCCGGCCTGCCTCAGGATCGCGAATCGGTCTACTGGGTTAA
TGTGAAAGCCATTCCATCTAAAAGTGACGACAGCGAAAACAAAAATGTTTTGCAGATTGCCGTTCGCACCCGAATCAAAC
TTTTTTATCGCCCGGCAGGTTTAAAGGGTGATGTAAAAACCGCGCCAAATGAACTGCGATTTACGCGTAACGGTAATCAG
CTCCGCGTTGATAATCCGACAGTTTTTAATATTACCTTTAATCAATTTTTTGCGAATGACAAAGAAATTGAAAAAGCAGG
CATGGTACCCGCTAAAGGGGCATTAAATATCACATTACCCGCCGGGGTAGGTAGCGTTTCTAAAATTAAATATAACACCA
TCAATGACTTTGGATCGTCAGCGGAAATGATCACTAAAAATGTTGATTGA

Protein sequence : 
MMKSKFVALALSLFLSQSVLAGGVGLSSTRVIYDGSKKEASLTVQNKSKTEEFLIQSWVDDAAGSKKTPFIITPPLFKLD
PEKNNILRIVNITPGLPQDRESVYWVNVKAIPSKSDDSENKNVLQIAVRTRIKLFYRPAGLKGDVKTAPNELRFTRNGNQ
LRVDNPTVFNITFNQFFANDKEIEKAGMVPAKGALNITLPAGVGSVSKIKYNTINDFGSSAEMITKNVD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fim2C AFH78430.1 putative fimbrial chaperone protein Virulence KpGI-5 Protein 2e-42 44
sfaE CAC16952.2 SfaE protein Virulence PAI III 536 Protein 2e-40 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ECH74115_4921 YP_002273031.1 chaperone protein FimC VFG0455 Protein 3e-77 69
ECH74115_4921 YP_002273031.1 chaperone protein FimC VFG1644 Protein 9e-41 44
ECH74115_4921 YP_002273031.1 chaperone protein FimC VFG0911 Protein 9e-41 44
ECH74115_4921 YP_002273031.1 chaperone protein FimC VFG0875 Protein 2e-41 44
ECH74115_4921 YP_002273031.1 chaperone protein FimC VFG0445 Protein 3e-44 42