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Name : ECH74115_4149 (ECH74115_4149) Accession : YP_002272337.1 Strain : Escherichia coli EC4115 Genome accession: NC_011353 Putative virulence/resistance : Virulence Product : type III secretion outer membrane pore, YscC/HrcC family Function : - COG functional category : N : Cell motility COG ID : COG1450 EC number : - Position : 3836831 - 3838534 bp Length : 1704 bp Strand : - Note : identified by match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM TIGR02516 DNA sequence : ATGAAAATAAAATTACGCATTACTATTATATTAATTTCAGTCTTATGCATTTTTAATGGATTATTGACTCCTGGTGCATA TGCCGCAGCAGCGAATGGATACGTAGCAAATAAAGAAAATCTACGTAGTTTTTTTGAAACGGTTTCATCATATGCGGGTA AGCCTACAATAGTTAGTAAGCTTGCCATGAAGAAACAGATCAGCGGAAATTTTGATTTAACAGAACCCTATGCCTTGATT GAACGCCTGTCGGCACAGATGGGGCTTATTTGGTATGATGATGGCAAAGCTATTTATATCTATGACTCATCAGAGATGCG TAATGCATTGATTAATCTGAGAAAGGTATCGACGAATGAGTTTAATAATTTCTTAAAAAAATCGGGTCTGTATAACTCTC GTTATGAAATTAAAGGGGACGGCAATGGTACTTTCTATGTATCGGGGCCACCGGTTTATGTTGACCTGGTCGTTAATGCT GCGAAATTAATGGAGCAAAACAGCGATGGCATTGAGATCGGTCGAAATAAAGTAGGAATAATTCATCTGGTCAACACATT CGTTAATGACCGGACTTATGAGTTACGTGGCGAAAAGATAGTTATTCCTGGCATGGCAAAAGTACTATCGACGTTGTTAA ATAATAACATTAAGCAAAGCACAGGGGTGAACGTACTTTCTGAAATTTCAAGTCGTCAACAACTAAAAAACGTATCACGT ATGCCTCCTTTTCCTGGGGCTGAAGAAGATGATGACCTACAAGTAGAGAAAATAATATCGACAGCAGGAGCGCCAGAGAC TGACGATATACAAATTATTGCATATCCTGATACCAACAGTTTACTTGTTAAAGGAACAGTATCTCAGGTTGATTTTATCG AGAAGTTAGTAGCTACGCTTGATATTCCAAAGCGACACATTGAATTATCTTTATGGATAATAGATATTGATAAGACTGAT CTAGAACAGCTAGGTGCTGACTGGTCGGGCACGATAAAAATTGGATCCAGCTTAAGTGCATCATTTAATAATTCAGGTTC AATTAGTACCCTTGATGGGACACAGTTTATTGCAACAATACAGGCACTTGCACAAAAAAGAAGAGCCGCCGTTGTTGCTC GTCCCGTCGTTTTAACACAAGAGAATATTCCTGCTATATTTGATAATAACCGCACTTTCTATACTAAATTAGTCGGCGAG CGTACTGCGGAATTGGATGAAGTAACCTATGGTACGATGATTAGCGTGCTACCACGATTTGCTGCGCGAAATCAAATTGA ATTACTCTTGAATATTGAAGATGGAAATGAAATCAATTCCGACAAGACCAATGTTGATGATCTGCCTCAGGTTGGTAGAA CACTTATAAGTACTATTGCACGCGTGCCCCAAGGGAAAAGTCTTTTGATTGGGGGATATACACGCGATACGAATACCTAT GAAAGTCGCAAGATCCCAATATTAGGCAGCATTCCATTTATTGGTAAATTATTTGGTTATGAAGGAACAAATGCGAATAA CATCGTTCGTGTCTTTCTTATTGAGCCAAGAGAGATCGATGAACGCATGATGAATAATGCGAATGAGGCTGCGGTTGATG CCAGAGCGATTACACAGCAAATGGCAAAAAATAAAGAAATCAACGATGAATTACTGCAGAAATGGATAAAAACTTACCTG AATCGTGAAGTCGTCGGAGGATAG Protein sequence : MKIKLRITIILISVLCIFNGLLTPGAYAAAANGYVANKENLRSFFETVSSYAGKPTIVSKLAMKKQISGNFDLTEPYALI ERLSAQMGLIWYDDGKAIYIYDSSEMRNALINLRKVSTNEFNNFLKKSGLYNSRYEIKGDGNGTFYVSGPPVYVDLVVNA AKLMEQNSDGIEIGRNKVGIIHLVNTFVNDRTYELRGEKIVIPGMAKVLSTLLNNNIKQSTGVNVLSEISSRQQLKNVSR MPPFPGAEEDDDLQVEKIISTAGAPETDDIQIIAYPDTNSLLVKGTVSQVDFIEKLVATLDIPKRHIELSLWIIDIDKTD LEQLGADWSGTIKIGSSLSASFNNSGSISTLDGTQFIATIQALAQKRRAAVVARPVVLTQENIPAIFDNNRTFYTKLVGE RTAELDEVTYGTMISVLPRFAARNQIELLLNIEDGNEINSDKTNVDDLPQVGRTLISTIARVPQGKSLLIGGYTRDTNTY ESRKIPILGSIPFIGKLFGYEGTNANNIVRVFLIEPREIDERMMNNANEAAVDARAITQQMAKNKEINDELLQKWIKTYL NREVVGG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| ECs3733 | NP_311760.1 | EivG | Not tested | LIM | Protein | 0.0 | 100 |
| invG | NP_457292.1 | secretory protein (associated with virulence) | Virulence | SPI-1 | Protein | 1e-135 | 54 |
| invG | NP_806501.1 | virulence-associated secretory protein | Virulence | SPI-1 | Protein | 1e-135 | 54 |
| invG | NP_461819.1 | outer membrane secretin precursor | Virulence | SPI-1 | Protein | 5e-135 | 54 |
| invG | YP_217817.1 | invasion protein; outer membrane | Virulence | SPI-1 | Protein | 5e-135 | 54 |
| invG | AAS66859.1 | InvG | Not tested | SSR-2 | Protein | 2e-115 | 47 |
| ysaC | AAS66838.1 | YsaC | Not tested | SSR-1 | Protein | 3e-87 | 43 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| ECH74115_4149 | YP_002272337.1 | type III secretion outer membrane pore, YscC/HrcC family | VFG0559 | Protein | 2e-135 | 54 |
| ECH74115_4149 | YP_002272337.1 | type III secretion outer membrane pore, YscC/HrcC family | VFG1004 | Protein | 1e-105 | 49 |
